Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 145 9e-30 seq7 100 3e-16 seq1 98.7 1e-15 seq3 95.1 1e-14 >seq2 Length=30838379 Score = 145 bits (160), Expect = 9e-30 Identities = 313/462 (68%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 11989770 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 11989711 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 11989710 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 11989653 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | |||| | | ||| |||| ||||||||||| ||||| | || ||||| || Sbjct 11989652 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 11989593 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || ||||| || || || || || ||||||||| Sbjct 11989592 GGAGCATTCTCTTTGGCCTTCTTGAAAAGATCTCGGACTCTAGATGCACCGACACCAACA 11989533 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || || || ||| | |||||| || Sbjct 11989532 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGC 11989474 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| ||||||||||| || || ||||| ||| |||| || ||||| Sbjct 11989473 AATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTT 11989414 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||| || ||| | |||||||||| | ||| || || ||||| | | Sbjct 11989413 TGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CAC 11989357 Query 9641 TTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 |||| || || | ||| || | |||| || ||||||| Sbjct 11989356 TTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 11989315 >seq7 Length=32205869 Score = 100 bits (110), Expect = 3e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 11158355 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 11158296 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 11158295 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 11158236 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334 || || || | || | ||| ||||| | || ||| |||| | | | || | || Sbjct 11158235 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 11158177 Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 11158176 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 11158117 Query 107394 G 107394 | Sbjct 11158116 G 11158116 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||||||||| || || | || |||||||| || || ||||| | || Sbjct 30819084 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 30819143 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 30819144 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 30819203 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 |||||||| | | | ||| ||||| | |||| | ||| | ||| || | Sbjct 30819204 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCC-----GTCGATCCAATTTAAC 30819258 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522 ||||| | || ||||| | | || || || || | |||||| | ||| | | ||| Sbjct 30819259 GCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 30819318 Query 117523 TTTTC 117527 ||||| Sbjct 30819319 TTTTC 30819323 >seq1 Length=28801852 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| | ||||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 4158401 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 4158342 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | | |||||| | | ||||||||||||| ||| ||| || || | || Sbjct 4158341 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 4158282 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||| | ||||||| |||| | | | || | || | || |||| Sbjct 4158281 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 4158224 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 4158223 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 4158174 >seq3 Length=28715784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 28140041 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 28139984 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 28139983 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 28139924 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || ||| || ||| | ||||| | ||| | || || ||||| |||||| Sbjct 28139923 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 28139864 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 ||||||| ||| ||||| | || ||| | |||| Sbjct 28139863 ACAAACAACTCAACAAACTCTGAGGCAGCACAT 28139831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589945076662560