Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq4844 578 4e-160 seq2 297 2e-75 seq20 122 1e-22 seq1 100 3e-16 >seq4844 Length=160129 Score = 578 bits (640), Expect = 4e-160 Identities = 720/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||||||||| ||||| || Sbjct 1523 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1464 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 1463 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCC 1405 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| ||||| || | |||||||| | || ||||| | ||||||||||| Sbjct 1404 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1345 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || ||| | || || ||||| || Sbjct 1344 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1285 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | ||||| |||||||| ||||| |||||||| || | | | Sbjct 1284 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1225 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | |||||||| | | | | Sbjct 1224 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1165 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | ||||| ||| Sbjct 1164 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1105 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||||| | ||||| || ||| ||||||||||||||||||||||| Sbjct 1104 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1045 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || ||||| |||||| | |||||||| || ||||||||||| |||||||| || Sbjct 1044 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 985 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 ||||| ||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 984 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 925 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| || || Sbjct 924 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 865 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || || || || || || Sbjct 864 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 805 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| ||||||||||| || | | | || |||||||| || Sbjct 804 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 745 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | ||||| | || ||||| ||||| Sbjct 744 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 685 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 ||| || || || || || |||||||| || || ||| | | ||| | ||| ||| Sbjct 684 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 625 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | |||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 624 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 565 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 ||| |||||||| |||||| |||| Sbjct 564 TCATAACTTCCCTCTAGACCTAGC 541 >seq2 Length=30838379 Score = 297 bits (328), Expect = 2e-75 Identities = 410/571 (72%), Gaps = 2/571 (0%) Strand=Plus/Minus Query 168503 GTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGT 168562 ||||| |||||| | ||| | ||||| |||||||||| ||||| || |||||||| | Sbjct 6214855 GTAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACT 6214796 Query 168563 TTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATAT 168621 ||||| || ||| | | ||| || ||| | || || |||| ||| || || || ||||| Sbjct 6214795 TTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATAT 6214737 Query 168622 CGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGG 168681 ||||| || | |||| ||| | | ||||| | ||||||||||| || || || || Sbjct 6214736 TGACGGTATTCGTGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGG 6214677 Query 168682 TGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGC 168741 ||| || |||| |||| || || ||| | || || ||||| || |||||||| || Sbjct 6214676 TGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGC 6214617 Query 168742 TACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCT 168801 | | ||||| |||||||| ||||| |||||||| || | | | | |||||| | Sbjct 6214616 ATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTT 6214557 Query 168802 AATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAG 168861 | | || | || ||||||||| | |||||||| | | | | | |||||| Sbjct 6214556 ACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCA 6214497 Query 168862 ACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGT 168921 |||||||| |||||| |||||||| | || | ||||| | | || ||| | | Sbjct 6214496 TCCTTGGATTGTTGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGAT 6214437 Query 168922 ATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATT 168981 |||||| ||||||| || ||| ||||||||||||||||||||||| ||||| || || Sbjct 6214436 CTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTT 6214377 Query 168982 CAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGC 169041 |||||||||| | ||||| | || ||||||||||| |||||||| || ||||| ||| Sbjct 6214376 CAACTTCATGATTGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTT 6214317 Query 169042 AGGAGTAGCAGGTATGTTCGGTGGATCTCTA 169072 ||| |||| || | || || || || ||| Sbjct 6214316 AGGCATAGCTTGTGTATTTGGCGGCTCCCTA 6214286 >seq20 Length=1106287 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 169292 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAAC 169351 ||||| || || | ||||| | || ||||| |||||||| || || || || || ||| Sbjct 251039 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 250980 Query 169352 CAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGA 169411 ||||| || || ||| | | ||| | ||| ||| |||| ||| | |||| | Sbjct 250979 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGT 250920 Query 169412 GCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTA 169471 || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||| || Sbjct 250919 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 250860 Query 169472 GC 169473 || Sbjct 250859 GC 250858 >seq1 Length=28801852 Score = 100 bits (110), Expect = 3e-16 Identities = 207/303 (68%), Gaps = 24/303 (8%) Strand=Plus/Minus Query 168977 ACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCA- 169035 || |||||||||||| | |||||||| || ||||||| ||||||| ||||| | ||||| Sbjct 20504926 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCCAC 20504867 Query 169036 ----TATGGC--AGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 |||| | ||| |||| ||| ||| || || || || ||||| || Sbjct 20504866 ATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCACGG 20504817 Query 169090 TTCACTT-GTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATG 169148 || |||| ||||| ||| | | ||| | || || || || | ||||||| || | Sbjct 20504816 TT-ACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAA 20504758 Query 169149 GTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCG 169208 | |||| || |||| ||| || ||||| || ||||||| | || |||| || || | Sbjct 20504757 GATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTG 20504698 Query 169209 GTAGATTAAT-CTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTT--CACTTCTTCC 169265 | ||| || ||||| ||||| ||||| ||| || | |||| || ||||||| Sbjct 20504697 GCTTATTGATACTTCCGATATGCTGGTTTCCGCAATTC--TCATTCTTTACATTTCTTCC 20504640 Query 169266 TAG 169268 ||| Sbjct 20504639 TAG 20504637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564407423061120