Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq4844 524 1e-143 seq2 266 5e-66 seq1 111 2e-19 seq20 105 1e-17 >seq4844 Length=160129 Score = 524 bits (580), Expect = 1e-143 Identities = 712/993 (72%), Gaps = 0/993 (0%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || ||| | ||| | ||| ||||| || || | ||| |||||||||||||||| | Sbjct 1523 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1464 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| | | | || || || || || | || ||||| ||||| ||| Sbjct 1463 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1404 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || ||||| ||||| || | || || ||| |||| ||| || | ||||| ||||| Sbjct 1403 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1344 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 || || |||||||| || | |||| ||| || || || || || || ||||| || Sbjct 1343 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 1284 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| ||| | ||||| |||||| | |||||||| || |||| | || || | Sbjct 1283 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1224 Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGA 215653 | |||||| | ||||| | || ||| || | ||||||||||| || | | Sbjct 1223 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1164 Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713 | |||||| | |||||||| |||||| || || || ||||| | || || ||| Sbjct 1163 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCT 1104 Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773 || ||| | | || ||| ||||||| || ||| ||||||| |||||| || |||||| Sbjct 1103 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1044 Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833 ||||| || ||||| | |||| |||| |||||||||||||||||||| || ||||||||| Sbjct 1043 TCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 984 Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893 |||||||||||||| || |||||||| ||||| || || | ||| ||| ||||| ||| Sbjct 983 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 924 Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953 || | || || ||| | | ||||| || || || || | |||||| || ||| Sbjct 923 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 864 Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013 |||| ||||| |||||||| ||||| || || ||||||||||| |||||||| ||||| Sbjct 863 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 804 Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073 || | ||||||||||| || ||||||||| || | | | || |||||||| || Sbjct 803 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 744 Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133 || | ||||| | |||||||| ||||| | ||| | |||||||| |||||| Sbjct 743 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 684 Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193 | || |||||||| |||||||| ||||| || || ||| || ||| ||| Sbjct 683 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 624 Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCT 216253 ||||| || || |||| | || |||||||||||||| ||||| || ||||| ||| Sbjct 623 TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 564 Query 216254 CACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || |||||||| ||||| | |||||| |||| Sbjct 563 CATAACTTCCCTCTAGACCTAGCTGCTATTGAA 531 >seq2 Length=30838379 Score = 266 bits (294), Expect = 5e-66 Identities = 393/557 (71%), Gaps = 0/557 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || || | ||| |||||||||||||||| | ||||| ||| | | | Sbjct 6214846 ACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 6214787 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| | ||| ||||| || ||||| ||||| || Sbjct 6214786 GCAACTTCTGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATTGACGGTATT 6214727 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || | ||| ||| ||| || | ||||| ||||| || || |||||||| || | Sbjct 6214726 CGTGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATT 6214667 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || || || ||||| || |||||||| ||| | ||||| Sbjct 6214666 CCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGAT 6214607 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 6214606 GAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 6214547 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| |||||||| Sbjct 6214546 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCATCCTTGGATT 6214487 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || | ||| | || || | | || ||| | | || ||| | Sbjct 6214486 GTTGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGATCTACCCAATT 6214427 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| ||||||| |||||| || ||||||||||| || ||||||| |||| Sbjct 6214426 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 6214367 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| || |||||||||||||||| || ||||||||||||||||||||||| | ||| Sbjct 6214366 ATTGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCATAGCT 6214307 Query 215855 GGTGTCTTCGGTGGTTC 215871 |||| || || || || Sbjct 6214306 TGTGTATTTGGCGGCTC 6214290 >seq1 Length=28801852 Score = 111 bits (122), Expect = 2e-19 Identities = 171/239 (72%), Gaps = 15/239 (6%) Strand=Plus/Minus Query 215780 ACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCAC 215839 || ||||||| |||| |||| |||||||||||||||| |||||| |||| |||||||| Sbjct 20504926 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCCAC 20504867 Query 215840 ATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATT-----GTTCTCTGCAATGCACGGTT 215894 |||||| || || | ||| | |||| | || |||| || |||||||||| Sbjct 20504866 ATGTTA----TGACT-AAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT---ATGCACGGTT 20504815 Query 215895 CACTT-GTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953 |||| || || ||| | | ||| | || || || || | ||||||| || | | Sbjct 20504814 -ACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAAGA 20504756 Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGG 216012 |||| || || | |||||||||||| ||| | || ||| |||| || | ||| ||||| Sbjct 20504755 TACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTGG 20504697 >seq20 Length=1106287 Score = 105 bits (116), Expect = 1e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||| | || |||||||| |||||||| ||||| || || ||| Sbjct 251015 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 250956 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| ||| ||||| || || |||| | || |||||||||||||| ||| Sbjct 250955 CGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATG 250896 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || || ||||| ||||| |||||||| ||||| | |||||| |||| Sbjct 250895 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTATTGAA 250848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745036485309120