Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq4844 657 0.0 seq2 324 2e-83 seq20 127 2e-24 seq1 111 2e-19 >seq4844 Length=160129 Score = 657 bits (728), Expect = 0.0 Identities = 731/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| |||||||||| Sbjct 553 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTAATA 612 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 613 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 672 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| ||||||| ||| | ||||| ||||| || || || Sbjct 673 AAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATACCTACT 732 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||| ||| || || | ||||||| ||||||||| |||||| ||| Sbjct 733 ACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 792 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || ||||||||||| || |||||||||||||| || |||||| Sbjct 793 AAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 852 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| || || |||||||||| ||||| | ||| | | ||| Sbjct 853 CCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 912 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 913 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCT 972 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 |||||||| || || |||||||||||||| || || |||||||| |||| |||| | ||| Sbjct 973 AACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTG 1032 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| ||||| |||| || || Sbjct 1033 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAG 1092 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 1093 ATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 1152 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||||||| | | |||||| Sbjct 1153 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 1212 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| |||||| || | | Sbjct 1213 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 1272 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | ||| ||||| ||| | |||| | ||| Sbjct 1273 GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCA 1332 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || |||||||| || | ||||| |||| || || ||||| ||||||||| Sbjct 1333 CCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCGTCA 1392 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| || || || || ||||| ||| || | | || Sbjct 1393 ATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAA 1451 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||| || ||||| | | ||||||||||||| || | ||||| | |||| || | Sbjct 1452 AGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTAGTTAT 1511 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 1512 CCAGTTACAGAAG 1524 >seq2 Length=30838379 Score = 324 bits (358), Expect = 2e-83 Identities = 407/556 (73%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 84381 CCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCC 84440 || || ||||||| ||| | || |||||||| || || |||||||||||||| || || Sbjct 6214293 CCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 6214352 Query 84441 GCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAG 84500 |||| || |||| |||| ||||||| || || ||||| || || ||||| |||||||| Sbjct 6214353 GCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 6214412 Query 84501 AAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCA 84560 ||| ||||| || | || || | | ||| |||| || || |||||||| |||| Sbjct 6214413 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGTAGTCGCTGCTGCAACAAGAGCT 6214472 Query 84561 GAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGA 84620 || || |||||| ||||| ||| ||||||| | ||| | ||||||||| |||||| Sbjct 6214473 GAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCACTCACGA 6214532 Query 84621 CCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCA 84680 ||||||||| | | |||||| | |||||| | |||| || | |||||| || ||| Sbjct 6214533 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCA 6214592 Query 84681 TTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATA 84740 || |||| |||||| || | ||| |||||||| || || || ||||| | ||| ||| Sbjct 6214593 TTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATA 6214652 Query 84741 GCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCA 84800 || ||| | |||| | ||||||||||| || |||||||| || | ||||| || Sbjct 6214653 GCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATTCA 6214712 Query 84801 GCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATG 84860 | || | ||||| |||||||||||||| ||||| || ||| ||| ||| || || || Sbjct 6214713 GAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCGATAATA 6214772 Query 84861 AA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATA 84919 || ||||| ||| || | | || ||| || ||||| | | ||||||||||||| || Sbjct 6214773 AATACAGA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTA 6214831 Query 84920 GATACGGTTGTTAGTG 84935 | ||||| | |||| Sbjct 6214832 AAGGCGGTTTTCAGTG 6214847 >seq20 Length=1106287 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| |||||||||| Sbjct 250870 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTAATA 250929 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 250930 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 250989 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCA 84154 || ||||| | || || ||||| ||||||| ||| | ||||| ||||| Sbjct 250990 AAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCA 251039 >seq1 Length=28801852 Score = 111 bits (122), Expect = 2e-19 Identities = 217/315 (69%), Gaps = 22/315 (7%) Strand=Plus/Plus Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||| |||| | | ||| || || | |||| || |||| ||| |||||| || Sbjct 20504624 ACAGGCCCAGCATCTAGGAAGAAATGTAAAGAATGAGAATTGCGGAAACCAGCATATCGG 20504683 Query 84225 AAG-AT-AAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTT 84282 ||| || || | | || || || | ||||||| ||||||| ||||||||||| ||| Sbjct 20504684 AAGTATCAATAAG-CCAAAATAAACATGAGCAGATACAATATCGTAAGTTTCCTCCTCTG 20504742 Query 84283 GACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAG 84342 |||| || |||| | | || | || |||||||||| ||||| ||||| | | || Sbjct 20504743 GACCAAATCTGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGATCAAACTAG 20504802 Query 84343 AAGTGA-CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGC---- 84397 | || | ||||| |||| ||||| || ||| || || || ||||||| Sbjct 20504803 AGGTTACCAAGT-AACCGTGCAT---AGGGAA-------CCGCCAAACGCACCAGCTAAG 20504851 Query 84398 ---AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAG 84454 | || |||||||| || | ||||| ||| ||| | || || |||||||| |||| Sbjct 20504852 CCTTAGTCATAACATGTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGAATACAAT 20504911 Query 84455 CATGTAGTTGAACGT 84469 |||| ||||||| || Sbjct 20504912 CATGAAGTTGAAAGT 20504926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571239009383520