Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 seq1 118 1e-21 seq3 89.7 6e-13 >seq7 Length=32205869 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||| ||||| | ||| | |||||||| ||| | || | | |||||||||||| || Sbjct 11158648 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 11158589 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | || || ||||| ||||||||||||| | || | || || || ||| Sbjct 11158588 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 11158529 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| ||||| || || ||| || | ||||||| || | || ||||| || Sbjct 11158528 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 11158469 Query 48539 TCCTTCTATACTATCATCTATCATA 48563 |||||| |||||||||||| ||||| Sbjct 11158468 TCCTTCAATACTATCATCTTTCATA 11158444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | |||||| | ||| ||||||||||| | |||||| | | || | || | Sbjct 11158331 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11158272 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| |||| ||||||| ||||| | ||| || || || ||||| || | ||| | Sbjct 11158271 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11158213 Query 48718 ACATATATTGAGGTCTTTCAACAA 48741 |||||| ||||||||||| |||| Sbjct 11158212 ACATATGCTGAGGTCTTTCTACAA 11158189 >seq1 Length=28801852 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| ||| | || | | |||||| ||||| ||| Sbjct 4158753 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 4158694 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||||||||| | || | || || || ||| Sbjct 4158693 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 4158634 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| || | |||||||| ||| Sbjct 4158633 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 4158574 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 4158573 CCTTCAATACTATCATCTTTCAT 4158551 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | |||||| | ||| ||||||||||| |||||||| | || | || | Sbjct 4158388 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 4158329 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| ||| ||||||| || || | ||| || || || | || || | ||| || Sbjct 4158328 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 4158270 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| |||||||| |||| ||| | | ||||| || || || | |||| Sbjct 4158269 CATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAG 4158210 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| || |||||||| Sbjct 4158209 GGTTTTGAAGCCAAAATA 4158192 >seq3 Length=28715784 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||||| ||||| | ||| | ||| | ||| |||||||| ||| Sbjct 24481719 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 24481660 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||| ||||| || ||||| || || | |||||| ||| || Sbjct 24481659 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAG 24481600 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | ||||||| || ||||||||||| || Sbjct 24481599 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 24481540 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || || |||||| |||| || ||||| || ||| Sbjct 24481539 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 24481498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562074764312160