Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq4844 538 1e-148 seq2 298 2e-76 seq20 105 2e-18 >seq4844 Length=160129 Score = 538 bits (596), Expect = 1e-148 Identities = 716/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 537 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 596 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || ||||| |||| ||| |||||||| || | || | || | |||||| || Sbjct 597 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 656 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || | || |||||||||||| | || | ||| || Sbjct 657 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 716 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||||||||||||||||||| || ||| || Sbjct 717 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 776 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || || ||||| || || || ||||| Sbjct 777 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 836 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || || ||||||| | || ||||| Sbjct 837 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 896 Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 | || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 897 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 953 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| || || || || | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 954 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1013 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| ||| ||||||||||| || || || || ||||||||||||||||| ||||| Sbjct 1014 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1073 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| || | ||||||| ||||| |||||| |||||||||||||| |||||||| Sbjct 1074 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 1133 Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625 || ||| ||||| || | |||||| || | ||||||||||||| | || |||| Sbjct 1134 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1193 Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685 |||| | | ||||| | ||||| | ||||| || | ||| || || || || || Sbjct 1194 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1253 Query 36686 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 36745 |||||| || || | || ||| |||||||| || ||||| || || | ||| || || Sbjct 1254 TAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 1313 Query 36746 CGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 36805 || | || | || || ||||| || || ||||||||||| |||| | ||| || || Sbjct 1314 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1373 Query 36806 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGC 36865 ||| ||||||||||| || ||||| || ||||| ||||||| || || || | |||| | Sbjct 1374 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1433 Query 36866 TGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925 | ||| || || | | ||||||||| | || |||||||| || | || ||||| Sbjct 1434 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCG 1493 Query 36926 GTTGTTTGTACTTGTAACCCAGTCACATAA 36955 ||| | || || || | ||||| ||| || Sbjct 1494 GTTTTCAGTGCTAGTTATCCAGTTACAGAA 1523 >seq2 Length=30838379 Score = 298 bits (330), Expect = 2e-76 Identities = 395/548 (72%), Gaps = 0/548 (0%) Strand=Plus/Plus Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 || || ||||| | || | || | ||| ||||| || ||||||||||| ||||| || Sbjct 6214293 CCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 6214352 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 |||| || |||| ||| || |||||||| || || || || ||||||||||||||||| Sbjct 6214353 GCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 6214412 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560 ||||| ||||| |||| ||||||| ||||| |||| | |||||||||||| | ||| Sbjct 6214413 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGTAGTCGCTGCTGCAACAAGAGCT 6214472 Query 36561 GAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 36620 ||||| || ||| ||||| || |||||| | | ||||||||||||| | || Sbjct 6214473 GAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCACTCACGA 6214532 Query 36621 CCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 36680 |||| |||| | | ||||| | ||||| | ||||| || | ||| || || || Sbjct 6214533 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCA 6214592 Query 36681 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 36740 || |||||||| || || | || ||| |||||||| || ||||| || || | ||| || Sbjct 6214593 TTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATA 6214652 Query 36741 GCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCT 36800 || || | || | || || ||||| || || ||||||||||| |||| | | | Sbjct 6214653 GCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATTCA 6214712 Query 36801 GAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAA 36860 || ||| | ||||||||||| || ||||| || ||||| ||| ||| || || || | | Sbjct 6214713 GAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCGATAATA 6214772 Query 36861 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 36920 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 6214773 AATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAA 6214832 Query 36921 AGGCGGTT 36928 |||||||| Sbjct 6214833 AGGCGGTT 6214840 >seq20 Length=1106287 Score = 105 bits (116), Expect = 2e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 250854 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 250913 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || ||||| |||| ||| |||||||| || | || | || | |||||| || Sbjct 250914 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 250973 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 36131 || || ||||| || || || || | || |||||||||||| Sbjct 250974 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 251016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150445745486776