Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq4844 560 3e-155 seq2 313 8e-81 seq20 105 2e-18 >seq4844 Length=160129 Score = 560 bits (620), Expect = 3e-155 Identities = 721/990 (73%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 537 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 596 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||| || | | ||| ||||| || || | | ||| | ||||| || Sbjct 597 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 656 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || | || |||||||||||| || || | || || Sbjct 657 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 716 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||||||||||||||||| ||| |||||| Sbjct 717 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 776 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || || ||||| || || || ||||| Sbjct 777 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 836 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || || ||| | | || ||||| Sbjct 837 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 896 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 897 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 956 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| || || | ||||||||| || ||||||||||| ||||| || |||||||| Sbjct 957 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1016 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||| || || |||||||||||||| || ||||||||||||||| |||||||| Sbjct 1017 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1076 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || |||| ||||| | || || || | ||| ||||| ||||| || |||||||||| Sbjct 1077 TTGACCGATTGGGTAGATCAAGAAAACAGCAGT-CGCTGCTGCAACAGGAGCTGAATATG 1135 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || ||||| || | | | ||||||||||||| | || |||| || Sbjct 1136 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 1195 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | ||||| | |||||| | || | || | || || || |||||||| | Sbjct 1196 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 1255 Query 5910 GCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967 ||||||||| | ||| || |||||||| || || || || || || || || || Sbjct 1256 ACCATTCATCAACGGAT--GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 1313 Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027 || | || | || || || || || || ||||||||||| ||||||||||| | || Sbjct 1314 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1373 Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087 |||||||| || ||||| || || ||||| || ||||| | ||| || | |||||| | Sbjct 1374 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1433 Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 || ||||||||| || | | || ||||| || ||||||||||| || | || ||||| Sbjct 1434 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCG 1493 Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| | |||||||| | ||||| |||||| Sbjct 1494 GTTTTCAGTGCTAGTTATCCAGTTACAGAA 1523 >seq2 Length=30838379 Score = 313 bits (346), Expect = 8e-81 Identities = 412/567 (73%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || || ||||| | ||| | || | ||||||||| || ||||||||||| ||||| || Sbjct 6214293 CCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 6214352 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 |||| ||||| | ||| ||||| |||||||||||||| || ||||||||||||||| Sbjct 6214353 GCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 6214412 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAG--GCTGCGGCAACCGGTG 5780 |||||||| || || | ||||| | || || || ||||| ||||| ||||| | | Sbjct 6214413 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAAC--AGTAGTCGCTGCTGCAACAAGAG 6214470 Query 5781 CTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGC 5840 |||||||||| || |||||| || |||| || | | | ||||||||||||| | | Sbjct 6214471 CTGAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCACTCAC 6214530 Query 5841 GTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTC 5900 | |||| |||| || | ||||| | |||||| | || | || | || || || | Sbjct 6214531 GACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGC 6214590 Query 5901 CATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCC 5958 ||||||| | ||||||||| | ||| || |||||||| || || || || || || || Sbjct 6214591 CATTGTATAACCATTCATCAACGGAT--GCCGCTTCCCATATCGGGTAAAAATGCAAACC 6214648 Query 5959 AATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGA 6018 || || || | || | || || || || || || ||||||||||| |||||||| Sbjct 6214649 TATAGCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGA 6214708 Query 6019 TCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAA 6078 | | | || ||||||| || ||||| || || ||||| || ||| | | ||| || | Sbjct 6214709 TTCAGAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCGAT 6214768 Query 6079 TATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCAC 6138 |||||| ||| ||||||||| || | | || ||||| || ||||||||||| || | Sbjct 6214769 AATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAAT 6214828 Query 6139 ATAGAGGCGGTTGTTGGTGCTAGTAAC 6165 || |||||||| | |||||||| || Sbjct 6214829 GTAAAGGCGGTTTTCAGTGCTAGTTAC 6214855 >seq20 Length=1106287 Score = 105 bits (116), Expect = 2e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 250854 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 250913 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||| || | | ||| ||||| || || | | ||| | ||||| || Sbjct 250914 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 250973 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTG 5353 || || ||||| || || || || | || |||||||||||| Sbjct 250974 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 251016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152640819213384