Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq4844 522 8e-144 seq2 280 4e-71 seq20 102 2e-17 >seq4844 Length=160129 Score = 522 bits (578), Expect = 8e-144 Identities = 710/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 541 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 600 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| |||| ||| |||||||| || | || | || | |||||| || || Sbjct 601 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 660 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || |||||||||||| | || | ||| || | | Sbjct 661 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 720 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||||||||||||||||| ||| ||| || || Sbjct 721 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 780 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || || ||||| || || || ||||| || Sbjct 781 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 840 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || || ||||||| | || ||||| | Sbjct 841 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 900 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 901 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAAT 957 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || || || | ||| ||||| || ||||||||||| ||||| || ||||| || Sbjct 958 ACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 1017 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| ||| ||||||||||| || || || || ||||||||||||||||| ||||| ||| Sbjct 1018 ACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCT 1077 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || || | ||||||| ||||| |||||| |||||||||||||| |||||||| || Sbjct 1078 TGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCA 1137 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 1138 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 1197 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | | ||||| | ||||| || | ||| || || || || || ||| Sbjct 1198 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 1257 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | || ||| |||||||| || ||||| || || | ||| || || ||| Sbjct 1258 CATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAA 1317 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || || || || ||||||||||| |||| | ||| || ||||| Sbjct 1318 GTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 1377 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 ||||||||||| || ||||| || ||||| ||||||| || || || | |||| | | Sbjct 1378 TCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAA 1437 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||||||||| | || |||||||| || | || |||||||| Sbjct 1438 GTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTT 1497 Query 26410 TTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||||| ||| || Sbjct 1498 TCAGTGCTAGTTATCCAGTTACAGAA 1523 >seq2 Length=30838379 Score = 280 bits (310), Expect = 4e-71 Identities = 391/548 (71%), Gaps = 0/548 (0%) Strand=Plus/Plus Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 || || ||||| | || | || | ||| ||||| || ||||||||||| ||||| || Sbjct 6214293 CCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 6214352 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 |||| || |||| ||| || |||||||| || || || || ||||||||||||||||| Sbjct 6214353 GCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 6214412 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 26040 ||||| ||||| |||| ||||||| ||||| |||| | |||||||||||| | ||| Sbjct 6214413 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGTAGTCGCTGCTGCAACAAGAGCT 6214472 Query 26041 GAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGT 26100 ||||| || ||| ||||| || ||| || | | ||||||||||||| | || Sbjct 6214473 GAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCACTCACGA 6214532 Query 26101 CCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCG 26160 |||| |||| | | || | | ||||| | ||||| || | ||| || || || Sbjct 6214533 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCA 6214592 Query 26161 TTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 26220 || || ||||| || || | || ||| |||||||| || ||||| || || | ||| || Sbjct 6214593 TTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATA 6214652 Query 26221 GCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCT 26280 || ||| | || | || || || || || || ||||||||||| |||| | | | Sbjct 6214653 GCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATTCA 6214712 Query 26281 GAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAA 26340 || ||| | ||||||||||| || ||||| || ||||| ||| ||| || || || | | Sbjct 6214713 GAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCGATAATA 6214772 Query 26341 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 26400 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 6214773 AATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAA 6214832 Query 26401 AGGCGGTT 26408 |||||||| Sbjct 6214833 AGGCGGTT 6214840 >seq20 Length=1106287 Score = 102 bits (112), Expect = 2e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 250858 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 250917 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| |||| ||| |||||||| || | || | || | |||||| || || Sbjct 250918 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 250977 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 25611 || ||||| || || || || | || |||||||||||| Sbjct 250978 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 251016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151984856948144