Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq4844 587 8e-163 seq2 277 2e-69 seq20 136 4e-27 seq1 82.4 8e-11 >seq4844 Length=160129 Score = 587 bits (650), Expect = 8e-163 Identities = 711/967 (74%), Gaps = 6/967 (1%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || ||| | || | |||||||| ||||| |||||||||||| || | | || Sbjct 1500 TGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGC 1441 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || |||||||| || |||||||| ||||| || ||||| | Sbjct 1440 AACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCG 1381 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||||||| | || || || || ||||| ||||| || || |||||||| | |||| Sbjct 1380 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCC 1321 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 || ||| ||||| ||| | || || || || || |||||||| ||| | ||||||| Sbjct 1320 TACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGA 1261 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 ||||| || ||||| || |||| | || | || | |||||| | | || | | Sbjct 1260 ATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 1201 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 ||| |||||| ||||||||||| || ||| | ||||||||||||||||| Sbjct 1200 TTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 1141 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||||||| || || || || | ||||| ||||| |||||| |||| || |||| Sbjct 1140 TGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGG 1081 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| ||| ||||| | |||||||| || || ||||||||||| || | |||| | Sbjct 1080 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGAT 1021 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || ||||| || |||||||||||||| |||||||| ||||| ||| | || || || || Sbjct 1020 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGG 961 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 ||||||||| || || || || ||||||||||| ||||| | || || ||| | | || Sbjct 960 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 901 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 ||| ||||| || || | || || || ||||| | ||||| ||||| ||||| Sbjct 900 CAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGA 841 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||| || || || |||||||| || || ||||| || ||||||||||| ||||| Sbjct 840 AACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 781 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||||||||| || ||||| | || |||||||| ||||| | ||||| || | ||||| Sbjct 780 TTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTG 721 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||||||||| | ||| | |||||||| |||||| | || |||||||| |||||||| Sbjct 720 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCA 661 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || ||||| |||| || || ||| ||| ||||| ||||| |||| | Sbjct 660 ATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAATCG 604 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || |||||||||||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 603 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 544 Query 163479 TGCTGCT 163485 |||||| Sbjct 543 AGCTGCT 537 >seq2 Length=30838379 Score = 277 bits (306), Expect = 2e-69 Identities = 396/558 (71%), Gaps = 0/558 (0%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || ||| | || | |||||||| ||||| |||||||||||| || | | || Sbjct 6214844 TGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGC 6214785 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || ||||||| || |||||||| ||||| || ||||| | Sbjct 6214784 AACTTCTGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATTGACGGTATTCG 6214725 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 |||| |||| | | || || || ||||| ||||| || || |||||||| | |||| Sbjct 6214724 TGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCC 6214665 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 || ||| ||||| ||| | || || || || || |||||||| ||| | ||||||| Sbjct 6214664 TACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGA 6214605 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 ||||| || ||||| || |||| | || | || | |||||| | | || | | Sbjct 6214604 ATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 6214545 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 ||| |||||| ||||||||||| || ||| | ||||||| ||||||||| Sbjct 6214544 TTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCATCCTTGGATTGT 6214485 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||||||| || || | || | ||||| |||| |||||| |||| || | || Sbjct 6214484 TGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGATCTACCCAATTGG 6214425 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| ||| ||||| | |||||||| || || ||||||||||| |||| |||| | Sbjct 6214424 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 6214365 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || || | || |||||||||||||| |||||||| ||||| ||| | || | || | Sbjct 6214364 TGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCATAGCTTG 6214305 Query 163062 TGTATTCGGTGGTTCACT 163079 |||||| || || || || Sbjct 6214304 TGTATTTGGCGGCTCCCT 6214287 >seq20 Length=1106287 Score = 136 bits (150), Expect = 4e-27 Identities = 145/190 (76%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 163299 CTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAA 163358 |||||||||||| | ||| | |||||||| |||||| | || |||||||| ||||| Sbjct 251040 CTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAA 250981 Query 163359 CCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA 163415 |||||| || ||||| |||| || || ||| ||| ||||| ||||| |||| Sbjct 250980 CCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAA 250924 Query 163416 CAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475 | || |||||||||||||||||||| || ||||||||||| |||||||| || || Sbjct 250923 TCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 250864 Query 163476 CCTTGCTGCT 163485 ||| |||||| Sbjct 250863 CCTAGCTGCT 250854 >seq1 Length=28801852 Score = 82.4 bits (90), Expect = 8e-11 Identities = 202/306 (66%), Gaps = 18/306 (6%) Strand=Plus/Minus Query 162983 GTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCC 163042 ||||||| |||| |||| | || ||||| || ||||||| ||| || |||| | |||| Sbjct 20504928 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCC 20504869 Query 163043 A-----TATGATT--GGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 | ||||| | || | || |||| || || ||||| || |||||| Sbjct 20504868 ACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCAC 20504819 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 |||| | || || ||| | | ||| | ||||| || || | || || | || | Sbjct 20504818 GGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAA 20504759 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 | || | || || | ||| || || |||||| | ||||| ||||||||| || ||| Sbjct 20504758 AGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTT 20504699 Query 163216 GGTCGCTTGAT-CTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCT 163274 || ||||| ||||| ||||| |||| ||| || | ||| | || |||||||| Sbjct 20504698 GGCTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCT 20504639 Query 163275 TGCTGC 163280 | ||| Sbjct 20504638 AGATGC 20504633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553051310715360