Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 seq7 104 4e-17 >seq1 Length=28801852 Score = 109 bits (120), Expect = 1e-18 Identities = 423/659 (64%), Gaps = 18/659 (3%) Strand=Plus/Plus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| ||||||||| ||| || ||| ||| ||| | | ||||| ||| | Sbjct 1183715 AACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCATCACGCGCTCCTCGCTTAAT 1183774 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 ||||| | ||| || || | || ||| || || || | ||| | ||||| || Sbjct 1183775 TTGTTCCTCAGCAAGCTG---TACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCT 1183831 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 || ||| ||| |||| |||||| || || ||||| | ||| | || ||| | ||| Sbjct 1183832 CGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAA 1183891 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || || |||| ||| |||||||| || || ||||| || ||||| | || Sbjct 1183892 AATATCGCGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGT 1183951 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 ||||| |||| | | ||| |||||| || ||||| || ||||| || Sbjct 1183952 CTCTCCGCGAATGTCTCCGAGCCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTG 1184008 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCC 48397 | ||| |||| ||| || | ||| || || | | |||| || | | || Sbjct 1184009 GCAACGCACGGCACCGTTTCAAAGGCGCGAAATAAGCGGCTCTTT---TCGTCGGAGTTT 1184065 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | || || || || | |||||| || ||||| | ||||| || ||||| Sbjct 1184066 TTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATT 1184125 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||| ||||||||||| | ||||| | || || |||||| | ||| || | Sbjct 1184126 TGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCG 1184185 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 || || || ||| || ||||| || || || |||||||| || || || | | ||| Sbjct 1184186 AGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAG 1184245 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT---GTACGTCTTTGCCCAGGTCCACT 48634 || ||||| | ||| || | ||||| | || | | ||| | |||||| || Sbjct 1184246 TGTTTCTCGTCGGCGGTTAG-GGATTCC--CACTGGCGGATGTCCTGCGACAGGTCGACC 1184302 Query 48635 TCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||| | ||||| || || || ||||| |||||||| |||| || ||||| || Sbjct 1184303 TCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCAGATTTCCGGGTA 1184361 >seq7 Length=32205869 Score = 104 bits (114), Expect = 4e-17 Identities = 363/562 (65%), Gaps = 11/562 (2%) Strand=Plus/Plus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || || || | ||| | || || || || ||| | | |||| ||||| Sbjct 30819066 CAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 30819125 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 | || ||||| | ||| | || ||||||||| || || || ||| || ||||| Sbjct 30819126 TAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAA 30819185 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || |||||||| || |||||| | | ||||| |||||| | ||| Sbjct 30819186 GAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC 30819245 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| | |||||| || ||||| || ||| || | |||||| ||||| Sbjct 30819246 ---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGC 30819302 Query 48367 CCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGC 48423 | ||||| ||||| || | | ||| | || || || ||| | Sbjct 30819303 GTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGA 30819359 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| || ||||| | ||||| || ||||| ||||| ||||||||||| | ||||| Sbjct 30819360 GTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTC 30819419 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 ||||| || || || ||| || ||| || || ||||| ||| || || || | Sbjct 30819420 GGCGACCTGGACCTCCGTCATGAACCT-TCCGGCGAGGTTCTCGAGGACGATGCCGTCGG 30819478 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || |||||||| || || || | | ||| || ||||| ||| || || | Sbjct 30819479 AGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCT 30819538 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | | |||| || || ||||| || ||||||| || ||||| | Sbjct 30819539 CCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGG 30819598 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 |||| |||||||| |||| || Sbjct 30819599 CTTTCTTGTACATTTCCCAAAT 30819620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931476395688960