Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 >seq6 Length=21175815 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28547 TGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 ||| || ||||| |||||||| ||||| | || || || || || ||| |||| ||| Sbjct 5335429 TGTGAAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGA 5335488 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 || || || | | | | ||||| || ||| ||||| |||||| | || Sbjct 5335489 GAGCTCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCC 5335548 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 || || ||| | || |||||||| || || ||| | ||||| ||| ||||||| Sbjct 5335549 GGACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGA 5335608 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||||||||||||||| ||| |||| Sbjct 5335609 TTACAACATTCAAAAAGAATCCACTTTGCA 5335638 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28547 TGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 ||| || ||||| || || || ||||| |||| || ||||| || || |||| ||| Sbjct 5316712 TGTCAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGA 5316771 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 || || || | | | | ||||| || ||| ||||| |||||| | || Sbjct 5316772 GAGCTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCC 5316831 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 || || ||| | || |||||||| || || ||| | ||||| ||| ||||||| Sbjct 5316832 GGACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGA 5316891 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||||||||||||||| ||| |||| Sbjct 5316892 TTACAACATTCAAAAAGAATCCACTTTGCA 5316921 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||||| || ||||| || ||||||||||||||| | ||| | || ||| Sbjct 13335070 GATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAAGATGGCAGAACGCTTGCAGAT 13335129 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||| || || || || ||| |||| Sbjct 13335130 TATAACATTCAAAAGGAGTCGACGCTTCACTTGGT 13335164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || || || ||| ||| |||| Sbjct 5265403 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 5265462 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| ||||| ||||| | || ||||||| Sbjct 5265463 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAA 5265522 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||||||||| || |||| || ||||| Sbjct 5265523 CAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAAT 5265582 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| || ||||| ||| Sbjct 5265583 ATCCAGAAAGAGTCAACTCTTCAC 5265606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425379685695876