Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq4844 522 8e-144 seq2 288 3e-73 seq20 105 2e-18 >seq4844 Length=160129 Score = 522 bits (578), Expect = 8e-144 Identities = 718/993 (72%), Gaps = 18/993 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 540 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 599 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | || | | |||||||| ||| | || | ||| | | | ||||| Sbjct 600 AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 657 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | || |||||||||||| || || | || || Sbjct 658 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 716 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||||| ||||||||||| | | |||||| Sbjct 717 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 776 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || || ||||| || || |||||||| Sbjct 777 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 836 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || || ||| ||| || || ||||| Sbjct 837 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 896 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 897 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 953 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || || || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 954 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1013 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | |||||||||||||||||| || || ||||||||||||||||| ||||| Sbjct 1014 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1073 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGA 18424 ||||| || | || || | | ||||| || || || || ||||| || || || || Sbjct 1074 TCCTTGACCGATTGGGTAGATCAAGAAA-AC--AGCAGTCGCTGCTGCAACAGGAGCTGA 1130 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| |||||| |||||| || |||||||| || | ||||||||||||| | || || Sbjct 1131 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1190 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 ||||||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 1191 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 1250 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || | || ||| |||||||| || ||||| || || | ||| || || Sbjct 1251 GTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGC 1310 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664 ||| | || | || || || || || || ||||||||||| |||| | ||| || Sbjct 1311 TGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGA 1370 Query 18665 GACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAA 18724 ||||| ||||||||||| || || || || ||||||||||||| || || || | ||| Sbjct 1371 AACAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAA 1430 Query 18725 TGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAG 18784 | | | || |||||| || | | ||||||||| | || |||||||| || | ||| || Sbjct 1431 TACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG 1490 Query 18785 GCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 |||||| | || || || | ||||| ||| || Sbjct 1491 GCGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1523 >seq2 Length=30838379 Score = 288 bits (318), Expect = 3e-73 Identities = 397/551 (72%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 || || ||||| | || | || | ||| ||||| || ||||||||||| ||||| || Sbjct 6214293 CCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 6214352 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 || | ||||| | |||||| ||||||||||| || || ||||||||||||||||| Sbjct 6214353 GCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 6214412 Query 18363 AAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGT 18419 ||||| ||||| |||| || || | | ||||| || || || || ||||| || | Sbjct 6214413 AAACTTCCTTGACCAATTGGGTAGATCAAGAAA-AC--AGTAGTCGCTGCTGCAACAAGA 6214469 Query 18420 GCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGT 18479 || ||||| |||||| |||||| || ||||||| | | ||||||||||||| | Sbjct 6214470 GCTGAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCACTCA 6214529 Query 18480 CGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCT 18539 || ||||||||| || | || | | ||||| | ||||| || | ||| || || Sbjct 6214530 CGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCG 6214589 Query 18540 CCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 18599 || || |||||||| || || | || ||| |||||||| || ||||| || || | ||| Sbjct 6214590 CCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCT 6214649 Query 18600 ATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCT 18659 || || ||| | || | || || || || || || ||||||||||| |||| | | Sbjct 6214650 ATAGCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGAT 6214709 Query 18660 CCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATC 18719 | || ||| | ||||||||||| || || || || ||||||||| ||| || || || Sbjct 6214710 TCAGAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCGATA 6214769 Query 18720 AAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACG 18779 | |||| | | || |||||| || | | ||||||||| | || |||||||| || | | Sbjct 6214770 ATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATG 6214829 Query 18780 TAGAGGCGGTT 18790 || |||||||| Sbjct 6214830 TAAAGGCGGTT 6214840 >seq20 Length=1106287 Score = 105 bits (116), Expect = 2e-18 Identities = 122/163 (75%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 250857 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 250916 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | || | | |||||||| ||| | || | ||| | | | ||||| Sbjct 250917 AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 250974 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTG 17993 ||||||||||| ||||| ||||| | || |||||||||||| Sbjct 250975 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 251016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151309695787336