Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq4844 499 9e-137 seq2 232 2e-56 seq20 123 7e-24 >seq4844 Length=160129 Score = 499 bits (552), Expect = 9e-137 Identities = 690/963 (72%), Gaps = 2/963 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 541 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 600 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||||| |||| ||| ||||||||||| || || || | || | | | | | | |||| Sbjct 601 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 660 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| |||||||||||||| || | || | |||| ||| Sbjct 661 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 720 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||||| ||||| || |||||||| | | ||| ||||| || || Sbjct 721 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 780 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| ||||||||||| || ||||| ||||| Sbjct 781 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 840 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| || || | | ||| || || || | Sbjct 841 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 900 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 901 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 960 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || || || | |||||| || || |||||||| || ||||||||||||||||| || Sbjct 961 CCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1020 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| | ||||| || || || || || | |||||| ||||||||||| || || Sbjct 1021 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1080 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 || | || || | | ||| ||||||||||| || || |||||||| || || |||||| Sbjct 1081 CCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAACA 1140 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | |||||||||||||| || ||||||||| | Sbjct 1141 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1200 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | || | | |||||||| ||||| | |||| Sbjct 1201 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 1260 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || |||||||| || ||||| || || | || || || | | Sbjct 1261 TCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTA 1320 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | || || || || || ||||| ||||| | || || |||| || ||||| Sbjct 1321 GGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1380 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || || || || || || || || || ||| |||||||||||||| || || Sbjct 1381 CGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTT 1440 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| | | | || ||||| | || || ||||| || | ||||| ||||| | Sbjct 1441 GCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTC 1499 Query 22430 AGT 22432 ||| Sbjct 1500 AGT 1502 >seq2 Length=30838379 Score = 232 bits (256), Expect = 2e-56 Identities = 386/555 (70%), Gaps = 2/555 (0%) Strand=Plus/Plus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || |||||||| | || | || | |||||| || || |||||||| || ||||||||| Sbjct 6214293 CCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 6214352 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 |||| || || | |||| ||||||| || || || || || | |||||| |||||||| Sbjct 6214353 GCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 6214412 Query 21999 AAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCA 22058 ||| || || |||| || || | | ||| |||| |||||| || || ||| |||| Sbjct 6214413 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGTAGTCGCTGCTGCAACAAGAGCT 6214472 Query 22059 GAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGT 22118 || || ||||||| ||||| || ||| || | || | |||||||||||||| || Sbjct 6214473 GAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCACTCACGA 6214532 Query 22119 CCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCG 22178 ||||||||| | || |||| | |||||| | || | || | | |||||||| Sbjct 6214533 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCA 6214592 Query 22179 TTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATG 22238 ||||| | ||||||||||| | || |||||||| || ||||| || || | || || Sbjct 6214593 TTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATA 6214652 Query 22239 GCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCA 22298 || | | |||| | || || || || || ||||| ||||| | || || || Sbjct 6214653 GCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATTCA 6214712 Query 22299 GCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATA 22358 | || |||| || || || || || || || || || || ||| |||||||||||| Sbjct 6214713 GAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCGATAATA 6214772 Query 22359 AAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATA 22417 || || || |||| ||| | | | || ||||| | || || ||||| || | || Sbjct 6214773 AATACAGAAGTTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCAACCAATGTA 6214831 Query 22418 AAGACGGTTATTAGT 22432 ||| ||||| | ||| Sbjct 6214832 AAGGCGGTTTTCAGT 6214846 >seq20 Length=1106287 Score = 123 bits (136), Expect = 7e-24 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 250858 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 250917 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||||| |||| ||| ||||||||||| || || || | || | | | | | | |||| Sbjct 250918 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 250977 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGT 21628 ||||| || ||||||||||| |||||||||||||| || Sbjct 250978 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGT 251015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146199589750320