Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 105 8e-18 seq2 104 3e-17 seq1 89.7 6e-13 seq3 86.0 7e-12 >seq7 Length=32205869 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| ||||||||||||||| | ||| || | || | Sbjct 11158116 CGGGATTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 11158175 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || ||| | ||||| ||| |||| | || || || Sbjct 11158176 G-TCCAAGGGAAGGTTGTAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAAT 11158234 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||||| | | |||||| | | |||||||||| | ||| Sbjct 11158235 TCACAAGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTT 11158294 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG--ATGTCCAGT 75364 || || ||| | || || || || |||||||| || ||||| || ||| |||| ||| Sbjct 11158295 CACCCATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCAGGCATGTTTAGT 11158354 Query 75365 T 75365 | Sbjct 11158355 T 11158355 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 |||||||| | | ||| | |||||| | || || || || | | ||||| || | Sbjct 30819323 GAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACG 30819264 Query 65035 TGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAGCGCCTTTTTGCGT 65092 ||||| | || ||| | ||| | |||| | ||||| ||| | | | |||| Sbjct 30819263 TGGGCGTTAAATTGGATCGAC-----GGCTCGGAGACTTTCGCGGAGAGATTAATCGCGT 30819209 Query 65093 TTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGA 65152 |||| || |||||||| || |||||||| ||| || ||||| || | |||| | || | Sbjct 30819208 TTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCAAAA 30819149 Query 65153 AGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTC 65212 |||| || | ||||| || || |||||||| || | || || ||||||||||||| Sbjct 30819148 AGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGATGAGGGTC 30819089 Query 65213 TCCAC 65217 ||||| Sbjct 30819088 TCCAC 30819084 >seq2 Length=30838379 Score = 104 bits (114), Expect = 3e-17 Identities = 252/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||||| ||| ||||| || || ||||| || || ||| || || || |||||| Sbjct 11989423 CTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAGGCAATTGCTGGTGAA 11989482 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | ||| ||||| || || | | | ||||| ||||||||||||||||| Sbjct 11989483 GCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTC 11989542 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 ||||| || || || ||||| || | | ||| || ||| || || ||||| Sbjct 11989543 GGTGCATCTAGAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA 11989602 Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAA 175537 || | ||||| |||||||| || || | ||| | | |||| | | | | || | Sbjct 11989603 TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGG--AGGGA 11989660 Query 175538 ATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG 175597 |||| || ||||| || || |||| || || | || || |||||||| ||||| | Sbjct 11989661 ATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTA 11989720 Query 175598 AGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCC 175657 | ||||| || | || ||||| || ||||| | | ||| || |||||| ||| | Sbjct 11989721 ATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTTGATTCTGCCTTAT 11989780 Query 175658 TTCGCCCGGGTCGTTTTGAT 175677 | | || || ||||||||| Sbjct 11989781 TGAGGCCTGGACGTTTTGAT 11989800 >seq1 Length=28801852 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||| | ||| | || ||| ||||| |||||||||| |||| | ||| |||| || Sbjct 4158174 CGGGATTTTGACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAG 4158233 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | |||| || || | ||||| ||| |||| || | || | Sbjct 4158234 G--TCCAAGGAAAAGTTGTAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGA 4158291 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| ||| ||||||||||||| | | |||||| | | |||||| ||| | || Sbjct 4158292 TTCACAAGGATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGT 4158351 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | | || ||| | || || || || |||||||| ||||||||| | ||| Sbjct 4158352 TTACCCATGCATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCAG 4158401 >seq3 Length=28715784 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 175385 CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCT 175444 ||||| || | ||||| ||| ||||||||||||| || || || || | ||| | | Sbjct 28139836 CTGCCTCAGAGTTTGTTGAGTTGTTTGTTGGTGTTGGCGCATCCAGAGTGAGGGATTTGT 28139895 Query 175445 TTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG 175504 |||| | ||| || ||| |||||||| || |||||||| |||||||| |||| Sbjct 28139896 TTGAGAAGGCCAAATCGAAGGCACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGG 28139955 Query 175505 GCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562 | | || | | || || | | | | || ||| || || ||||| || || ||||| Sbjct 28139956 GGAGACAGAGAGGAGCAGGGCTTGGAGG--AGGAAACGATGAAAGAGAGCAGACTATTAA 28140013 Query 175563 TCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || | || || |||||||||||| Sbjct 28140014 TCAGCTTTTGACTGAAATGGATGGCTTT 28140041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596533477710720