Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq4844 506 3e-138 seq2 242 5e-59 seq20 116 5e-21 seq1 96.9 4e-15 >seq4844 Length=160129 Score = 506 bits (560), Expect = 3e-138 Identities = 701/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 541 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 600 Query 7951 GCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || | | ||||| | ||| |||| ||| ||| | ||| | | |||||| || || Sbjct 601 GCAC-GATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGA 659 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 |||||| || || || || || | ||| || ||||| |||| |||||| | || ||| || Sbjct 660 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAA 719 Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AA 8128 ||| | || ||| || || | | ||| |||||||| || | | | | ||||| || Sbjct 720 CCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAA 779 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 || | ||||| |||||||| |||| ||||| || || |||||||| || |||||||| | Sbjct 780 ACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAG 838 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| |||||||| || | ||||| || ||| || | ||| || || || | Sbjct 839 TTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCC 898 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 899 TGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATA 958 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| ||| ||| ||||| || |||||||| ||||| ||||| || ||||||| Sbjct 959 CACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 1018 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | |||||| || || |||||||| || ||||||||||| |||||||| || || | Sbjct 1019 CAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTT 1078 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 |||| | ||| || | ||||| || || || || | || ||||| |||||| | Sbjct 1079 GACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAA 1138 Query 8489 CACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAG 8548 || ||||| || | |||||| | ||| | | ||||||| | |||||||||| Sbjct 1139 CAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAAC 1198 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | | || | || ||| ||||| || || || |||| Sbjct 1199 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACC 1258 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || |||||||| || || || || || || || ||||| |||| Sbjct 1259 ATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAG 1318 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | |||||||| || || ||||||||||| | | || || | |||||||| Sbjct 1319 TAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTT 1378 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAG 8788 ||||||||||||| ||||| || || ||||||||||| || || | ||||| || || Sbjct 1379 CACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAG 1438 Query 8789 CAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGT 8848 || | || || ||| ||||| | ||| ||||||||||| | ||||| | ||| | Sbjct 1439 TTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTT 1498 Query 8849 TTGTACTTGTAACCCA 8864 || || || | ||| Sbjct 1499 CAGTGCTAGTTATCCA 1514 >seq2 Length=30838379 Score = 242 bits (268), Expect = 5e-59 Identities = 386/554 (70%), Gaps = 0/554 (0%) Strand=Plus/Plus Query 8293 AGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTA 8352 || || || || || | || |||| ||| ||| ||||| || |||||||| ||||| Sbjct 6214287 AGGGAGCCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTG 6214346 Query 8353 TGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCA 8412 ||||| || | ||||| | ||||||||| || |||||||| || ||||||||||| ||| Sbjct 6214347 TGCTCAGCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCA 6214406 Query 8413 TCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACT 8472 ||||| || || ||||||| ||| || | ||||| || | || || | || Sbjct 6214407 TCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGTAGTCGCTGCTGCAACA 6214466 Query 8473 GGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCAC 8532 |||| |||||| ||| ||||| || |||||| | ||| | | |||||| Sbjct 6214467 AGAGCTGAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCAC 6214526 Query 8533 TGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGA 8592 | | |||||||||| || | |||| | |||||| | | || | || ||| ||| Sbjct 6214527 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGA 6214586 Query 8593 CCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAAT 8652 || || || || ||||| ||||| | | || |||||||| || || || || || || Sbjct 6214587 CCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAA 6214646 Query 8653 CCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAAT 8712 || ||||| |||| |||| | |||||||| || || ||||||||||| | | Sbjct 6214647 CCTATAGCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGA 6214706 Query 8713 GAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCC 8772 || | | |||| |||||||||||||||| ||||| || || |||||| |||| || || Sbjct 6214707 GATTCAGAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCG 6214766 Query 8773 ACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCG 8832 | ||||| || || || | || || ||| ||||| | ||| ||||||||||| Sbjct 6214767 ATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCA 6214826 Query 8833 ACATAAAGTCTGTT 8846 | ||||| | ||| Sbjct 6214827 ATGTAAAGGCGGTT 6214840 >seq20 Length=1106287 Score = 116 bits (128), Expect = 5e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 250858 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 250917 Query 7951 GCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || | | ||||| | ||| |||| ||| ||| | ||| | | |||||| || || Sbjct 250918 GCAC-GATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGA 250976 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 |||||| || || || || || | ||| || ||||| |||| |||||| | || ||| || Sbjct 250977 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAA 251036 Query 8070 CCA 8072 ||| Sbjct 251037 CCA 251039 >seq1 Length=28801852 Score = 96.9 bits (106), Expect = 4e-15 Identities = 180/264 (68%), Gaps = 18/264 (7%) Strand=Plus/Plus Query 8134 GCATACTGGAAG-ATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTC 8192 ||||| ||||| || ||| ||||| || ||||||||| ||||||| || || || Sbjct 20504675 GCATATCGGAAGTATCAATAAGCCAAAATAAACATGAGCAGATACAATATCGTAAGTTTC 20504734 Query 8193 TTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGAT 8252 || ||| ||||||| | || | | || |||| || | ||| || || || | ||| Sbjct 20504735 CTCCTCTGGACCAAATCTGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGAT 20504794 Query 8253 TAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACC 8312 | | ||| || || || |||||||||| || || || || ||| ||| Sbjct 20504795 CAAACTAGAGGTTACCAAGTAACCGTGCAT----------AGGGAACCGCCAAACGCACC 20504844 Query 8313 TGCTACCCCT--GCCATA-----TGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 |||| ||| | |||| ||||| | ||||| ||||||| | ||||| || |||| Sbjct 20504845 AGCTAAGCCTTAGTCATAACATGTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGA 20504904 Query 8366 ATACGAACATGAAGTTAAACGTAC 8389 |||| | ||||||||| || |||| Sbjct 20504905 ATACAATCATGAAGTTGAAAGTAC 20504928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615825109531680