Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq4844 592 5e-165 seq2 306 1e-78 seq20 140 9e-29 seq1 98.7 3e-16 >seq4844 Length=160129 Score = 592 bits (656), Expect = 5e-165 Identities = 731/994 (74%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||| ||||| |||| |||||| Sbjct 1532 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTT 1473 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||| ||||| Sbjct 1472 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 1414 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| ||||| || |||||||||||||| ||||| ||||| || || Sbjct 1413 TGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1354 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || || |||||||| | | |||| | || || || | ||||| Sbjct 1353 TGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT 1294 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || |||| |||||||| || |||| |||||| | ||||||||||| |||||| | Sbjct 1293 TTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 1234 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 1233 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 1174 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 1173 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 1114 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 ||||||||| || ||| | |||| ||| | || ||||| |||||| ||||| ||||| Sbjct 1113 AGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCC 1054 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| ||||| |||||| | || ||||||||||| || ||||| || Sbjct 1053 TCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 994 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||| | || || || || ||||| || || || | ||| || Sbjct 993 TATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 934 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || |||||| | | | | ||||| || ||||| ||| Sbjct 933 TATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 874 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| || |||| |||||||||||||| || |||||||| || || || || || || Sbjct 873 TAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGG 814 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 813 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 755 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| || || |||||||| || || || || ||||||||| || | || | || |||| Sbjct 754 TCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTA 695 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||||| |||||||| || || |||||||| | ||||||| ||| || || Sbjct 694 TGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG 635 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || ||| |||||||||||| | |||||||| |||||||| | || || ||||| | Sbjct 634 TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 575 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | || ||||| ||||||||||| || || || || Sbjct 574 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 541 >seq2 Length=30838379 Score = 306 bits (338), Expect = 1e-78 Identities = 404/558 (72%), Gaps = 2/558 (0%) Strand=Plus/Minus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369 ||| | ||||| ||||| |||| ||||||||||| ||||||| || | | | | Sbjct 6214846 ACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 6214787 Query 42370 GCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCAT 42428 || || | ||| |||||| |||| ||||||| ||| ||||| ||||| ||||| || || Sbjct 6214786 GCAACTTC-TGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATTGACGGTAT 6214728 Query 42429 TCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGT 42488 |||||||| ||| |||| ||||| || ||||| ||||| || || |||||||| | | Sbjct 6214727 TCGTGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTAT 6214668 Query 42489 GCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGA 42548 |||| | || || || | ||||| || |||| |||||||| || |||| Sbjct 6214667 TCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGA 6214608 Query 42549 CGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTAT 42608 |||||| | ||||||||||| |||||| |||| | || | |||||| | | ||| | Sbjct 6214607 TGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 6214548 Query 42609 CTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 | |||| |||| || || ||||||||| | ||| | || ||| || ||||| Sbjct 6214547 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCATCCTTGGAT 6214488 Query 42669 CTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATT 42728 ||||||| || || || | ||| || ||||||||| | || ||| | |||| ||| | Sbjct 6214487 TGTTGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGATCTACCCAAT 6214428 Query 42729 TGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCAT 42788 ||| ||||| |||||| ||||| |||||||| || || || ||||| ||||||||||| Sbjct 6214427 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCAT 6214368 Query 42789 GTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGC 42848 | | || || ||||||| || ||||| |||||||| || ||||| ||| | || | || Sbjct 6214367 GATTGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCATAGC 6214308 Query 42849 CGGCGTATTTGGTGGGTC 42866 | |||||||| || || Sbjct 6214307 TTGTGTATTTGGCGGCTC 6214290 >seq20 Length=1106287 Score = 140 bits (154), Expect = 9e-29 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 43090 TGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAAC 43149 ||||||||| || | || | || |||||||| || ||||| |||||||| || || ||| Sbjct 251039 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 250980 Query 43150 CAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGT 43209 ||||| | ||||||| ||| || ||| || ||| |||||||||||| | |||||| Sbjct 250979 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGT 250920 Query 43210 GCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTT 43269 || |||||||| | || || ||||| || || ||||| ||||||||||| || || || Sbjct 250919 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 250860 Query 43270 GC 43271 || Sbjct 250859 GC 250858 >seq1 Length=28801852 Score = 98.7 bits (108), Expect = 3e-16 Identities = 217/320 (68%), Gaps = 18/320 (6%) Strand=Plus/Minus Query 42768 TTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCC 42827 |||| |||| |||||||||||| | || ||||||||||| || | ||||||| ||||| | Sbjct 20504933 TTCCAGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTC 20504874 Query 42828 TTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGG--TCGTTGTTCTCAGCTATGCAT 42885 ||||| ||| | || ||| || ||||| | | | |||| ||||||| Sbjct 20504873 ATTCCACATG--TTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTC---CCTATGCAC 20504819 Query 42886 GGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTAT 42945 ||| | || |||||| | | | || ||||| || ||||| ||| | || | Sbjct 20504818 GGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAA 20504759 Query 42946 GGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTT 43005 | |||| || |||| ||||||||| ||||| | ||||| | || |||| ||| ||| Sbjct 20504758 AGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTT 20504699 Query 43006 GGACGGCTTAT-----CTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTC 43059 ||||||| ||||| |||||| | |||| ||| || ||||| || ||| Sbjct 20504698 ----GGCTTATTGATACTTCCGATATGC-TGGTTTCCGCAATTCTCATTCTTTACATTTC 20504644 Query 43060 TTTCTTGCCGCTTGGCCCGT 43079 || || | ||| |||| || Sbjct 20504643 TTCCTAGATGCTGGGCCTGT 20504624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143524543634512