Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq4844 585 3e-162 seq2 288 1e-72 seq20 129 7e-25 >seq4844 Length=160129 Score = 585 bits (648), Expect = 3e-162 Identities = 724/989 (73%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 |||| | ||| ||||| |||| |||||| | || | |||||||| |||||| | | Sbjct 1522 TCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGA 1463 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | || || | || ||| |||||||||||||||| |||| Sbjct 1462 TGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTC 1403 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||| |||||||||||||| || |||| ||| || | ||||| ||||| | Sbjct 1402 CAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATA 1343 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | || |||||||| || | |||| ||| || || ||| | || || || || || | Sbjct 1342 TTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATAT 1283 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| | ||||||| ||||| |||||||| ||||||| | || | || Sbjct 1282 GGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 1223 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTC 155329 | |||||| | | || | | ||| |||||| ||||||||||| || ||||| Sbjct 1222 TACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTC 1163 Query 155330 TTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTG 155389 | || |||||||||||||| ||||||||| || || || || | || ||| |||| Sbjct 1162 TGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTG 1103 Query 155390 TATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCT 155449 | ||| | | || || |||||||||| ||| ||||||| |||||||| || |||| Sbjct 1102 TTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 1043 Query 155450 CTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCT 155509 |||||||||| || | ||| | || ||||| || || ||||| |||||||||||||| | Sbjct 1042 CTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 983 Query 155510 TCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTT 155569 |||||||| | || ||||| ||||| ||||| || || || ||| ||||||||| |||| Sbjct 982 TCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 923 Query 155570 CATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTT 155629 | ||||| || ||| | ||| | ||||| || || | || ||| || |||| Sbjct 922 CCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTT 863 Query 155630 ACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTC 155689 ||| ||||| ||||| |||||||||||||| || || |||||||| || || || || | Sbjct 862 ACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCC 803 Query 155690 GTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTG 155749 | | |||||||| ||||| |||||||| || | | | || |||||||| |||| Sbjct 802 GATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTG 743 Query 155750 CATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACC 155809 | |||||||| || | |||||| |||||| | ||| | || ||||| |||||| Sbjct 742 CTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACT 683 Query 155810 TTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTA 155866 | || |||||||| |||||||| |||||||| || |||| ||| || || || Sbjct 682 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATA 626 Query 155867 CATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACG 155926 | ||||| || ||| |||| || ||| |||||||||||||| ||||| || ||||| | Sbjct 625 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 566 Query 155927 CTCACAACTTCCCTCTTGACCTTGCTGCT 155955 |||| ||||||||||| ||||| |||||| Sbjct 565 CTCATAACTTCCCTCTAGACCTAGCTGCT 537 >seq2 Length=30838379 Score = 288 bits (318), Expect = 1e-72 Identities = 399/559 (71%), Gaps = 0/559 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| |||||| | || | |||||||| |||||| | ||||||||| | | | | Sbjct 6214845 CTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCG 6214786 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||||||||||| ||| ||||| ||||| ||||| ||||||| Sbjct 6214785 CAACTTCTGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATTGACGGTATTC 6214726 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 |||||| || ||| ||| || | ||||| ||||| || || |||||||| || | | Sbjct 6214725 GTGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTC 6214666 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || ||| | || || || || || |||||||| ||| | |||||| Sbjct 6214665 CTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATG 6214606 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| |||||||| ||||||| | || | || | |||||| | | || | Sbjct 6214605 AATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 6214546 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| |||||| ||||||||||| || |||| | || |||| ||||||||| Sbjct 6214545 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCATCCTTGGATTG 6214486 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 ||||||||| || || | || | || ||| |||| ||| | | || || | | Sbjct 6214485 TTGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGATCTACCCAATTG 6214426 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||| ||| ||||||| |||||||| || |||||||||||||| |||| ||| Sbjct 6214425 GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGA 6214366 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || || | || || ||||| |||||||||||||| ||||||||| | || |||| Sbjct 6214365 TTGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCATAGCTT 6214306 Query 155531 GTGTGTTCGGTGGATCTCT 155549 |||| || || || || || Sbjct 6214305 GTGTATTTGGCGGCTCCCT 6214287 >seq20 Length=1106287 Score = 129 bits (142), Expect = 7e-25 Identities = 139/183 (76%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| |||||| | || |||||||| |||||||| ||| Sbjct 251033 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCT 250974 Query 155836 GTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCT 155892 ||||| || |||| ||| || || ||| ||||| || ||| |||| || ||| Sbjct 250973 GTAGTTGA---TAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCT 250917 Query 155893 GGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCT 155952 |||||||||||||| ||||| || ||||| ||||| ||||||||||| ||||| ||| Sbjct 250916 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 250857 Query 155953 GCT 155955 ||| Sbjct 250856 GCT 250854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584799788228640