Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq4844 513 4e-141 seq2 289 8e-74 seq20 113 1e-20 seq1 80.6 8e-11 >seq4844 Length=160129 Score = 513 bits (568), Expect = 4e-141 Identities = 714/992 (72%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 537 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 596 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | |||| || ||||||||| ||| ||| || ||| | | || ||||| Sbjct 597 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 656 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| | ||| ||||||||||| ||||| | | || Sbjct 657 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 716 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | || ||||| |||| | ||| |||||| Sbjct 717 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 776 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| |||||||| ||||||||||| ||||| Sbjct 777 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 836 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || || |||||| |||| ||||| || Sbjct 837 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 896 Query 40889 CCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACC 40945 || || | | |||| || ||||| || ||||||||| || | | || || Sbjct 897 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 953 Query 40946 AAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTG 41005 || || || || ||||| | ||| |||||||||||||| || |||||||| || || || Sbjct 954 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1013 Query 41006 GAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGA 41065 ||| |||| |||||| ||||| || ||| |||||||| ||||||||||||||| ||| Sbjct 1014 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1073 Query 41066 ACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTA 41125 || ||||||| ||| || | ||||| ||||| ||||||| | ||||||| || Sbjct 1074 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 1133 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 ||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 1134 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1193 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| ||||| || | ||| ||||| | ||||| || | ||| || ||||| ||||| Sbjct 1194 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1253 Query 41246 TAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 || ||| || || | | |||| |||||||| || ||||| ||||| | || || || Sbjct 1254 TAACCATTCATCAACGGATGCC-GCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTG 1312 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | || ||||| ||||||||||| || || | || || || |||| Sbjct 1313 CAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAA 1372 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-A 41423 | || ||||| || || || |||||||| || || || || || |||||||| || || | Sbjct 1373 CAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATA 1432 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 || | || || || | ||| | || ||||| | |||||||||||||| | ||| ||| Sbjct 1433 CA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGG 1491 Query 41484 CGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || |||||||| | ||||||||| || Sbjct 1492 CGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1523 >seq2 Length=30838379 Score = 289 bits (320), Expect = 8e-74 Identities = 411/568 (72%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || ||||| || | || | ||| | ||| |||||||||||||| || |||||||| || Sbjct 6214293 CCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 6214352 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || | || |||| |||||||||||| || ||| |||||||| ||||||||||||||| Sbjct 6214353 GCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 6214412 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAG-AGCTGCTG--ACAATGGA 41117 ||| || ||||| | ||| || | ||||| |||| ||| ||||||| |||| || Sbjct 6214413 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG-TAGTCGCTGCTGCAACAA--GA 6214469 Query 41118 GCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGT 41177 |||| ||||| |||| ||||| || |||||| | | | | ||||||||||| Sbjct 6214470 GCTGAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCACTCA 6214529 Query 41178 CTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCG 41237 | ||| ||| ||||| || | ||| ||||| | ||||| || | ||| || ||| Sbjct 6214530 CGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCG 6214589 Query 41238 CCGTTGTATAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCC 41296 || ||||||| ||| || || | | |||| |||||||| || ||||| ||||| | || Sbjct 6214590 CCATTGTATAACCATTCATCAACGGATGCC-GCTTCCCATATCGGGTAAAAATGCAAACC 6214648 Query 41297 GATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGA 41356 || || ||| | |||| | || ||||| ||||||||||| || || | || || Sbjct 6214649 TATAGCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGA 6214708 Query 41357 GCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGAT 41416 | ||||| | ||||| || || || |||||||| || || || | || |||||||| Sbjct 6214709 TTCAGAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCGAT 6214768 Query 41417 TATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTA 41475 || || ||| | || || || | ||| | || ||||| | |||||||||||||| | Sbjct 6214769 AATAAATACA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAA 6214827 Query 41476 CGTATAGGCGGTTGTCGGTGCTAGTGAC 41503 ||| |||||||| || |||||||| || Sbjct 6214828 TGTAAAGGCGGTTTTCAGTGCTAGTTAC 6214855 >seq20 Length=1106287 Score = 113 bits (124), Expect = 1e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 250854 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 250913 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | |||| || ||||||||| ||| ||| || ||| | | || ||||| Sbjct 250914 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 250973 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 || ||||| || || |||||||| | ||| ||||||||||| Sbjct 250974 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGT 251015 >seq1 Length=28801852 Score = 80.6 bits (88), Expect = 8e-11 Identities = 201/300 (67%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 40733 AGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAA-TATTA 40791 |||| | || ||||| |||| | | | |||| ||| ||||||| | || ||| | Sbjct 20504632 AGCATCTAGGAAGAAATGTAAAGAATGAGAATTGCGGAAACCAGCATATCGGAAGTATCA 20504691 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 | ||||| ||| | || |||| ||| || | ||||| || | || ||||||| Sbjct 20504692 ATAAGCCAAAATAAACATGAGCAGATACAATATCGTAAGTTTCCTCCTCTGGACCAAATC 20504751 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAA 40911 | || | | || | |||||| |||| ||||| ||||| || | || || || | Sbjct 20504752 TGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGATCAAACTAGAGGTTACCA 20504811 Query 40912 GGCTTCCGTGCATAGC-AGCAAACAAA-GCACCACCAAAGACGCCTGCAACGCCGAGCAT 40969 | |||||||||| | | |||| |||||| | ||| ||| | | | ||| Sbjct 20504812 AGTAACCGTGCATAGGGAACCGCCAAACGCACCAGCTAAG---CCTT--AGTCATAACAT 20504866 Query 40970 ATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGT 41029 ||||||| |||| |||||| |||| || || ||||| |||| |||||||||||| || Sbjct 20504867 GTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGT 20504926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143694133878696