Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq4844 578 4e-160 seq2 286 4e-72 seq20 127 2e-24 >seq4844 Length=160129 Score = 578 bits (640), Expect = 4e-160 Identities = 709/967 (73%), Gaps = 6/967 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 537 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 596 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | |||| || || ||||| ||| ||| || || |||| ||||| Sbjct 597 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAAC 653 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || | |||||| |||||||| | ||| | || Sbjct 654 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGC 713 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| |||||||| || | | | || || Sbjct 714 AGTGAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATT 773 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || || |||||||| || || || Sbjct 774 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATT 833 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| || || || | || || || Sbjct 834 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGT 893 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || || || || Sbjct 894 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 953 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| ||||||||||||||||||||||||||||| || || Sbjct 954 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1013 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| | || ||||||||||| || || |||||||| | ||||| ||| Sbjct 1014 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1073 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||||| || |||| |||||| ||||| ||||| | || ||||| || || Sbjct 1074 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 1133 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| ||||||||||||||||| |||||| || ||||||||||| |||||| Sbjct 1134 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1193 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | || | |||| || ||||| || Sbjct 1194 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1253 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | | ||| |||||||| || || || || || | ||| || || Sbjct 1254 TAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 1313 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||||||||| || ||||| || || | || || || | ||| Sbjct 1314 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1373 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | ||||| || ||||| |||||||| || |||||||| || || || || Sbjct 1374 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1433 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCG 68314 || | ||| | | || ||| |||||||| ||||| |||||||||| || | ||| Sbjct 1434 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCG 1493 Query 68315 ATTGTCA 68321 || ||| Sbjct 1494 GTTTTCA 1500 >seq2 Length=30838379 Score = 286 bits (316), Expect = 4e-72 Identities = 398/558 (71%), Gaps = 0/558 (0%) Strand=Plus/Plus Query 67764 AGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTG 67823 || || || || ||||||| |||| || | ||| |||||||||||||||||||||||| Sbjct 6214287 AGGGAGCCGCCAAATACACAAGCTATGCCTAACATGTGGAATGGGTGCATAAGGATGTTG 6214346 Query 67824 TGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCG 67883 ||||| || | || || | |||| |||| ||||||||||| || || |||||||| | Sbjct 6214347 TGCTCAGCCTATAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCA 6214406 Query 67884 TCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACT 67943 ||||| ||| |||||||| | || |||| |||||| |||| ||||| | || Sbjct 6214407 TCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGTAGTCGCTGCTGCAACA 6214466 Query 67944 GGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCAC 68003 |||| || ||||| ||| ||||||||| ||||||| | |||| || |||||||||| Sbjct 6214467 AGAGCTGAATATGCAACAACAATCCAAGGATGCATACCCATACGGAAACTAAGTTCCCAC 6214526 Query 68004 TGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGT 68063 | |||||| ||| | | || | | |||||| | || | || | |||| Sbjct 6214527 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGA 6214586 Query 68064 CCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGA 68123 || ||||| || ||||| ||||| | | ||| |||||||| || || || || || | | Sbjct 6214587 CCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAA 6214646 Query 68124 CCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGC 68183 || || || ||| |||||| || ||||||||||| || ||||| || || | || Sbjct 6214647 CCTATAGCTGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGA 6214706 Query 68184 GAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCA 68243 || | | |||| |||| | ||||| || ||||| |||||||| || ||||||| || Sbjct 6214707 GATTCAGAAACAAGTTCACGAATACCGTCAATATCTACTGGAGGAGCAACAATGAAGGCG 6214766 Query 68244 ATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCA 68303 || || || || | ||| | | || ||| |||||||| ||||| ||||||||| Sbjct 6214767 ATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCA 6214826 Query 68304 ACATAGATGCGATTGTCA 68321 | || | ||| || ||| Sbjct 6214827 ATGTAAAGGCGGTTTTCA 6214844 >seq20 Length=1106287 Score = 127 bits (140), Expect = 2e-24 Identities = 143/190 (75%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 250854 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 250913 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAAC 67474 || | |||| || || ||||| ||| ||| || || |||| ||||| Sbjct 250914 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAAC 250970 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || | |||||| |||||||| | ||| | || Sbjct 250971 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGC 251030 Query 67535 AGTGAACCAG 67544 |||||||||| Sbjct 251031 AGTGAACCAG 251040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566912871347040