Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7 102 1e-16 seq4 102 1e-16 seq1 91.5 2e-13 seq6 84.2 3e-11 >seq7 Length=32205869 Score = 102 bits (112), Expect = 1e-16 Identities = 351/549 (64%), Gaps = 7/549 (1%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| ||||| ||| | ||| ||||||| || || || ||||| || ||||| Sbjct 30819070 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 30819129 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| || | ||||| ||||||||||||| ||||| | || ||||| Sbjct 30819130 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 30819189 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || ||||| ||||| || ||||| |||||||| || || ||| | | | | || Sbjct 30819190 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCT-----CCGAGCCGT 30819244 Query 18338 --ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 ||||| ||| ||||| ||| | || || | |||| || || | Sbjct 30819245 CGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGT 30819304 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 ||| | | | ||||| | ||| ||||| || ||||| || | | || || |||| Sbjct 30819305 GAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACA 30819364 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 |||| || || ||| | || || || || || || | || || | | |||||||| Sbjct 30819365 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGA 30819424 Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 || | ||| | || ||| | | | ||||| || || ||||| | | || Sbjct 30819425 CCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTG 30819484 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635 |||| || || | || | | | ||| || || || | | | | || | ||| | Sbjct 30819485 CGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGT 30819544 Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695 | ||||| || ||||||||||| || | |||||||| || | |||||| | | Sbjct 30819545 GGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCT 30819604 Query 18696 TGTACATTT 18704 ||||||||| Sbjct 30819605 TGTACATTT 30819613 >seq4 Length=19951838 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||||||||| || || | || || || ||| Sbjct 7827094 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 7827035 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || ||||| || || |||||||| || ||||| || ||||| || Sbjct 7827034 GACACTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 7826975 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || |||||||| |||||| || || | ||||||| || Sbjct 7826974 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAAC 7826915 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || || | || || ||||| ||||| ||| Sbjct 7826914 ATTCAGAAGGAATCCACACTGCATTTGGTGTTGAGA 7826879 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | ||||| || || ||||| |||||||| || ||| Sbjct 7827550 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 7827491 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || ||||| || |||||||| || || || || Sbjct 7827490 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 7827431 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| || || | | || || ||| Sbjct 7827430 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTACAAT 7827371 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| || || Sbjct 7827370 ATTCAGAAGGAGTCCACTCTTCACTTGGT 7827342 >seq1 Length=28801852 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || || ||||| ||||| ||| | |||||||||| || |||| ||||| Sbjct 1183793 TACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAG 1183852 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || |||| || ||||||| || | ||||| | ||||||||||| |||||| | Sbjct 1183853 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 1183912 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318 || |||||||| || || ||||| || |||||||| | ||| || || || Sbjct 1183913 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAA 1183962 >seq6 Length=21175815 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| |||| ||||| || || || | |||||||| || Sbjct 5316946 AATGCAGATCTTCGTCAAAACCCTGACGGGAAAGACGATCACTCTGGAAGTCGAGAGCTC 5317005 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| || ||||| || ||||||||||| || || || || || Sbjct 5317006 TGACACCATTGACAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATCA 5317065 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | |||| | ||| || |||||||| || ||| || || | | ||||| || Sbjct 5317066 GCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACGCTTGCGGATTACAA 5317125 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| |||| |||||| | ||||| | | || |||||| Sbjct 5317126 CATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGTCTGAGGGGCGGT 5317174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| |||| ||||| || || || | |||||||| || Sbjct 5335663 AATGCAGATCTTCGTCAAAACCCTGACGGGAAAGACGATCACTCTGGAAGTCGAGAGCTC 5335722 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| || ||||| || ||||||||||| || || || || || Sbjct 5335723 TGACACCATTGACAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATCA 5335782 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | |||| | ||| || |||||||| || ||| || || | | ||||| || Sbjct 5335783 GCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACGCTTGCGGATTACAA 5335842 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| |||| |||||| | ||||| | | || |||||| Sbjct 5335843 CATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGTCTGAGGGGCGGT 5335891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731827685150400