Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 seq4 113 8e-20 seq3240 89.7 9e-13 seq7 84.2 4e-11 >seq6 Length=21175815 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| |||||||| || | || | || |||| ||||||||||| || Sbjct 5265600 AGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCGTCTTCCAATTGTTTTCC 5265541 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 |||||| || ||||| ||||| || ||||| || || || || ||||| || || || Sbjct 5265540 AGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTGTCTTGGATCTTGGCCTT 5265481 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || |||||||| || || || ||||| || || || ||||||| || Sbjct 5265480 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 5265421 Query 172052 TTTAATGAATATCTGCAT 172069 ||| | ||| |||||||| Sbjct 5265420 TTTGACGAAGATCTGCAT 5265403 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | || | ||| || ||| |||||||| | Sbjct 5235282 ACCACCACGAAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGC 5235223 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | || || |||||||| || | ||||| || || ||||| Sbjct 5235222 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 5235163 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || |||||| ||||||||||| || || Sbjct 5235162 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCAC 5235103 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || ||||| || || || | ||||||||||| Sbjct 5235102 CTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 5235055 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | ||| | || | ||| || || |||||||| Sbjct 5235056 ATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCC 5234997 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | ||||| ||||| || || || | ||| || || ||| Sbjct 5234996 GCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGT 5234937 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 5234936 GGAATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 5234877 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| ||||| ||||| | || |||| ||||||||||| Sbjct 5234876 ACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 5234827 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || || || || || | ||| | ||| | ||| || ||| || ||||| Sbjct 5317176 ATACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCC 5317117 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || |||| || || |||||||| || | | ||| || |||||| Sbjct 5317116 GCAAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGT 5317057 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || ||||| || || || || || || || || Sbjct 5317056 GGGATCCCTTCTTTATCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCG 5316997 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || || || || || | ||||| | ||| ||||||||| Sbjct 5316996 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 5316946 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || || || || || | ||| | ||| | ||| || ||| || ||||| Sbjct 5335893 ATACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCC 5335834 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || |||| || || |||||||| || | | ||| || |||||| Sbjct 5335833 GCAAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGT 5335774 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || ||||| || || || || || || || || Sbjct 5335773 GGGATCCCTTCTTTATCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCG 5335714 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || || || || || | ||||| | ||| ||||||||| Sbjct 5335713 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 5335663 >seq4 Length=19951838 Score = 113 bits (124), Expect = 8e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || | || | ||||||||||| ||| || ||||| || || Sbjct 7826636 AAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTC 7826695 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| || | || |||| || || || |||||||| || ||||| || || || Sbjct 7826696 AGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGG 7826755 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || || || |||||| || |||||| || || ||||| || Sbjct 7826756 AGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTC 7826815 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||||||||| || || ||||| || | ||| ||||||||| Sbjct 7826816 AACCTCCAGGGTAATGGTTTTTCCCGTCAATGTCTTCACGAAAATCTGCATT 7826867 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | ||| || ||| ||||||||| Sbjct 7827093 ATGCCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCT 7827152 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | | || || | || || ||||||||||| || ||||| ||||| || Sbjct 7827153 GC-AAGGGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGG 7827211 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || |||||||| || || || |||||| ||| || ||||| ||| Sbjct 7827212 AGGAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTC 7827271 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || ||||| || || || | || |||||||| Sbjct 7827272 CACCTCCAAAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 7827322 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || || || | ||| | ||| || |||||| || || Sbjct 7827321 ATACCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCG 7827380 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | || ||||||||||| || | ||||| |||||||| Sbjct 7827381 GCGAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGC 7827440 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| ||||| |||||||| || || Sbjct 7827441 GGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 7827500 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||| || ||||| | || |||| || || ||||| Sbjct 7827501 ACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 7827550 Score = 89.7 bits (98), Expect = 9e-13 Identities = 168/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || || || | || | ||| || || |||||||| Sbjct 7833102 ATGCCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCG 7833161 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | |||||||||||||| || | ||||| || || ||| Sbjct 7833162 GCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 7833221 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| |||||| || ||||| || ||| Sbjct 7833222 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCA 7833281 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT--AT 172077 || || || || |||||||| ||||| | || || | || || |||| | |||| || Sbjct 7833282 ACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGCA-TCTATTGGAT 7833340 Query 172078 AAAAA 172082 ||||| Sbjct 7833341 AAAAA 7833345 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||| ||||| || | |||||||||||| ||||| || ||||| || ||||| || Sbjct 7861929 TGTTTACCGGCAAAGATAAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATC 7861988 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || || || || ||| || || |||||||| || || ||| Sbjct 7861989 TTGGCTTTCACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGAGTAATCGTCTTGCCA 7862048 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | || |||||||| Sbjct 7862049 GTGAGGGTCTTTACAAAGATCTGCAT 7862074 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | |||||| || ||||| || ||||| || || || || || Sbjct 7827633 TGCTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGAATC 7827692 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || ||||| || || ||||| | || || ||||||||| Sbjct 7827693 TTAGCCTTGACATTGTCGATTGTATCAGAACTCTCAACTTCCAAGGTGATAGTTTTACCA 7827752 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | ||||| | |||||||||||| Sbjct 7827753 GTCAGGGTTTTCACAAATATCTGCATT 7827779 >seq3240 Length=620 Score = 89.7 bits (98), Expect = 9e-13 Identities = 168/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || || || | || | ||| || || |||||||| Sbjct 522 ATGCCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCG 463 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | |||||||||||||| || | ||||| || || ||| Sbjct 462 GCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 403 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| |||||| || ||||| || ||| Sbjct 402 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCA 343 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT--AT 172077 || || || || |||||||| ||||| | || || | || || |||| | |||| || Sbjct 342 ACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGCA-TCTATTGGAT 284 Query 172078 AAAAA 172082 ||||| Sbjct 283 AAAAA 279 >seq7 Length=32205869 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 || |||||||| |||||||| || | |||||| ||||||||||| | |||||| | Sbjct 30819121 AATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCT 30819180 Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCT 39277 || ||||| || |||||||| || ||||| || |||| ||| Sbjct 30819181 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCT 30819221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905081194015200