Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq6 122 3e-22 seq3 120 9e-22 seq1 120 9e-22 seq7 98.7 3e-15 seq8 84.2 6e-11 >seq2 Length=30838379 Score = 132 bits (146), Expect = 1e-25 Identities = 286/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| ||| |||| || ||||| || || || ||||||||||| Sbjct 11989716 CTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCC 11989657 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 |||| ||| | | | ||| || | || ||||| ||||||||||| || | || Sbjct 11989656 TCCTCC--AATTCC---AGTTCCTCTTTGTCTT-CCAACGGCATCAATTTCATCCACAAA 11989603 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCT 289113 | | || |||| ||| | | | || | || ||| | |||| || | ||||| Sbjct 11989602 TACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCTCGGACTCTAGATGCA 11989545 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||||| |||| || ||||| |||||| | |||| | || | |||| ||| Sbjct 11989544 CCGACACCAACAAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAATGGAACACC 11989486 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || || | |||| | || ||||| ||||| || ||||| || || || | | Sbjct 11989485 GGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAG 11989426 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || ||| ||| || || ||||||| |||| | || Sbjct 11989425 AAGAACACCCTTTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAA 11989366 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | |||| | || | ||||||||||||| ||| || |||||| |||| || Sbjct 11989365 CTCCACCACTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATCATCAAATGT 11989306 >seq6 Length=21175815 Score = 122 bits (134), Expect = 3e-22 Identities = 223/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC- 289088 || || ||||| ||||| ||||| || | || || || ||||| | || | ||| Sbjct 20507998 CCCACTGCATCTATTTCATCAATAAACACCAAGCATGGCGAATTC-GCCTTGGCCTTGTT 20508056 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||||||| | || ||||| | ||||||| |||| || | || || || | Sbjct 20508057 AAACAAATCTCTTACTCTTGAAGCTCCTACACCAACAAACATCTCAATGAACTCCGATCC 20508116 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | || || | || |||||| || |||| ||| | |||| || ||||| Sbjct 20508117 TGACAGAGAAAAAAAGGGAACCCCTGCTTCTCCAGCTATGGCCTTAGCCAACAGCGTCTT 20508176 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||| || ||||| || ||||||||||||| ||||| | |||||| ||| | | Sbjct 20508177 TCCTGTCCCTGGTGGCCCAACTAATAGAACTCCTTTTGGAATTTTTGCACCAACTGCGGC 20508236 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 ||||||| || ||| | |||| ||||| || | || || | |||||| ||||| Sbjct 20508237 GAATTTCTCTGGTGTCTGAAGGAATTGCACAATCTCTTGAAAATCTTGTTTTGCTTCATC 20508296 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 | ||| || |||||| |||| || Sbjct 20508297 AACTCCAGCAACATCATCAAATGT 20508320 >seq3 Length=28715784 Score = 120 bits (132), Expect = 9e-22 Identities = 282/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || || || |||||||| ||| || Sbjct 28140041 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 28139982 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || || | || || ||| | | | | || |||||||||||||| ||||| || | Sbjct 28139981 TCC--AAGC--CCTGCTC-CTC-TCTGTCTCCCCACAGCATCAATTTCATCAATAAACAC 28139928 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | |||||| | || | | || | |||| || || || || | |||||| |||| Sbjct 28139927 AATACACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAAC 28139868 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||||||| ||| || ||||| || || || | || ||| | |||| || |||| Sbjct 28139867 ACCAACAAACAACTCAACAAACTCTGAGGCAGC-ACATGAGAAAAATGGCACGCCGGCTT 28139809 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||||||| |||| | || || || ||||| ||||| || |||||| || Sbjct 28139808 CTCCAGCAACTGCCCTAGCCAATAAAGTTTTCCCAGTTCCTGGTGGCCCAACTAATA-AA 28139750 Query 289238 CTCCCTTTGGTACTTTT-GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | |||||| | | | || || || || | || || || ||| | |||| ||| || Sbjct 28139749 CACCCTTTTGGAATCTTAGCGCCCAAAGCTGTGTACTTATCGGGGTTTTTTAGAAAATCA 28139690 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | || | | ||| ||||||| | |||| || || ||||||||||| || Sbjct 28139689 ACTACCTCTTGTAATTCCAATTTTGCTTGATCAGCACCAGCCACATCAGCAAATGT 28139634 >seq1 Length=28801852 Score = 120 bits (132), Expect = 9e-22 Identities = 216/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || |||||||| ||| | || || | ||| || || || || ||| || || Sbjct 28227309 CATTATATCTTCCATTGCCTTCACTAGCCGCCTCTGGATGTATCCGGTCTCAGAAGTCTT 28227250 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | |||||||||||||||||| || | ||| | || Sbjct 28227249 CACTGCAGTATCAATAAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGTGG 28227190 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | | | ||| |||| || || || || || ||| || || Sbjct 28227189 GGTCAGCCCACGCAGGTACGAGTTCTCCACAAACCCTCGACTTTCTGGCCCATAATCATC 28227130 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATCAA 302803 || ||||| || |||| |||| | ||| || | || |||||||||||||||| || | Sbjct 28227129 TTTAGTAAAATGAGGCAATGTCC-GATCTACAAACCCAAATGGGATACGCTTTCCTTCCA 28227071 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | |||||||| |||| || | | ||||||| || ||||| | ||| || ||||| | Sbjct 28227070 CATTCTGCTGCCCCACACAAGCAGTCATCTGTGATATATTGATGAAACTTCCTTTGGATC 28227011 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 28227010 CAGCTGTCACCAT 28226998 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 156046 AACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| |||||||| ||| || ||||| ||||| || ||||| | ||| || || | Sbjct 4158773 AATTACCCTTCCTCTTGCCGCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCC 4158714 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||| ||||| || || ||||| ||||| ||||||| || | || Sbjct 4158713 GCAGCATTGGCACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTG 4158654 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| || |||| | |||||||| || | |||| || ||| || | Sbjct 4158653 CACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACT 4158594 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| | || ||||||||| |||||||| ||| Sbjct 4158593 CCTTCAAAGTATCATATATTCCTTCAATACTATCATCTTTCAT 4158551 >seq7 Length=32205869 Score = 98.7 bits (108), Expect = 3e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 156044 AAAACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| || ||||||||| |||||||| ||||| || ||||| | ||| || || Sbjct 11158669 AAAAATACCCTTTCTCTTGCCACCTCCCTGATCCACATAACGGGCAGTATCATTAAACAC 11158610 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | ||||| || | ||| |||||||| || || || ||||| ||||||| |||| Sbjct 11158609 CCGCAGCATTGGGACAATGCCATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGT 11158550 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 || |||| || |||| | |||||||| || | |||| || ||| || Sbjct 11158549 TGCACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAACAGCACA 11158490 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||| | | || ||||||||| |||||||| ||| Sbjct 11158489 CTCCTTCAAAGTTTCATAGATTCCTTCAATACTATCATCTTTCAT 11158445 >seq8 Length=22711823 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | |||||||||||| | ||||||||| || || ||||| |||||||| ||| Sbjct 7252531 GCACCATGAGCAATCATACAATCTCTCTCCATTTCTCCAAATCGAAGGCCACCATCCCGA 7252590 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | | ||||| |||||||| | || ||| | | |||||| | || ||| Sbjct 7252591 GATCGTCCCTCAGCAGGCTGCCTTGTAAGAATCTGTACAGGACCCCTACCACGAGAATGG 7252650 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||||| ||||| ||||| || | ||||| ||| ||| || | ||| || Sbjct 7252651 ATTTTATCATCAACCATGTGCTTCAGTCTTTGGTAATATGTGGGGCCAAGGAATAT 7252706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471726253480428