Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq4844 529 2e-145 seq2 259 6e-64 seq3 138 1e-27 seq20 104 3e-17 >seq4844 Length=160129 Score = 529 bits (586), Expect = 2e-145 Identities = 711/987 (72%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || ||| | ||| |||||||||||||||| || Sbjct 1523 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1464 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| | | | || || || || || ||| | || ||||| ||||||||| Sbjct 1463 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1404 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| ||||| ||||| || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 1403 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1344 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 1343 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 1284 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || | | || || ||||| || || || |||||||| || || || || Sbjct 1283 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1224 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 1223 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1164 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 || || ||| | |||||||| ||| ||||| ||||| ||||| | ||||| ||| Sbjct 1163 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCT 1104 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 1103 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1044 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 || ||||| ||||| |||||| | || ||||| || || |||||||| || |||||||| Sbjct 1043 TCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 984 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834 ||||| ||| ||| ||||| ||| | ||||| || || |||||||| ||||| ||| Sbjct 983 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 924 Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGC 72894 || | || || || | | ||||| || || ||||| || || | || || Sbjct 923 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 864 Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954 || | ||||| ||||| |||||||| ||||| || || |||||||| || || || || Sbjct 863 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 804 Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| ||| Sbjct 803 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 744 Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAAC 73074 | | |||||||| || | ||||| || | | ||||| | || ||||| |||||| Sbjct 743 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 684 Query 73075 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACC 73130 | || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 683 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 624 Query 73131 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 73190 |||| ||| || |||| | || |||||||| |||||||||||||||||| | || Sbjct 623 ----TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 568 Query 73191 TGCACACAACTTCCCACTAGACCTAGC 73217 ||| || |||||||| ||||||||||| Sbjct 567 TGCTCATAACTTCCCTCTAGACCTAGC 541 Score = 345 bits (382), Expect = 5e-90 Identities = 698/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| ||| || || ||||| || | || |||||||| Sbjct 35835 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 35894 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 35895 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 35954 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| || ||||| | || || ||| | || || || || ||| Sbjct 35955 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTA 36014 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| | || | | | ||| | | ||||| || ||||| Sbjct 36015 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 36074 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 36075 CCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTT 36134 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || |||| || | || ||||| |||||||||||| | | || ||||| |||| | Sbjct 36135 GCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGC 36194 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | || ||||| || ||| |||| || || || || || || || Sbjct 36195 TCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTT 36254 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | || || || ||||| |||| ||| | |||||||||| || ||| || ||| Sbjct 36255 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 36314 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || || || || ||||| | || | || | || || || || ||| || | || Sbjct 36315 GTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 36374 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 || |||||||||||||| || || ||| || | || | || | ||||||||||| ||| Sbjct 36375 CCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCAT 36434 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 || || || ||| | || || || | |||||| || | | | | Sbjct 36435 GGCGCTACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGTG 36477 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 ||| | || ||| | || || | || || || | ||||| || ||| ||| | Sbjct 36478 CAAAC----ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTC 36533 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 36534 ACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 36593 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 36594 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 36653 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || ||||| || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 36654 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 36713 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 36714 GATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 36773 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 36774 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 36833 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 36834 CGTGGAAACGCTCTTTAA 36851 >seq2 Length=30838379 Score = 259 bits (286), Expect = 6e-64 Identities = 386/548 (70%), Gaps = 0/548 (0%) Strand=Plus/Minus Query 72247 GTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGT 72306 ||||| |||||| || ||| | ||| |||||||||||||||| || |||||||| | Sbjct 6214855 GTAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACT 6214796 Query 72307 CTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATC 72366 | | || || || || || ||| | || ||||| | |||||||||||| ||||| Sbjct 6214795 TTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATT 6214736 Query 72367 GACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGT 72426 ||||| || | |||| ||| | | ||| | | ||||| ||||| || || |||||| Sbjct 6214735 GACGGTATTCGTGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGT 6214676 Query 72427 GCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCC 72486 || | |||| |||| || ||||| || || || || || || |||||||| || Sbjct 6214675 GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCA 6214616 Query 72487 ACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTT 72546 | | || || ||||| || || || |||||||| || || || || | |||||| | Sbjct 6214615 TCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 6214556 Query 72547 ATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGA 72606 |||| | || ||||||||| | |||||||||| | | | | || ||| Sbjct 6214555 CTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCAT 6214496 Query 72607 CCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTG 72666 |||||||| ||| ||||| ||||| | ||| | ||||| | | || ||| | | Sbjct 6214495 CCTTGGATTGTTGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGATC 6214436 Query 72667 TATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTC 72726 || ||| | ||||| || || |||||||||||||| ||||| ||||| ||||| ||| Sbjct 6214435 TACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTC 6214376 Query 72727 AACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCA 72786 ||||||||| | || || | || || |||||||| || |||||||| ||||| ||| | Sbjct 6214375 AACTTCATGATTGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTA 6214316 Query 72787 GGTGTAGC 72794 || |||| Sbjct 6214315 GGCATAGC 6214308 >seq3 Length=28715784 Score = 138 bits (152), Expect = 1e-27 Identities = 217/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| ||| || || ||||| || | || |||||||| Sbjct 8270427 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 8270368 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 8270367 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 8270308 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| || ||||| | || || ||| | || || || || ||| Sbjct 8270307 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTA 8270248 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || ||| | || | | | ||| | | ||||| || ||||| Sbjct 8270247 ACCGCCGCAGTTTCGACTCCTACTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 8270188 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 | || |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 8270187 CTTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTT 8270128 Query 73664 GCATTACATGG 73674 || || || || Sbjct 8270127 GCTTTCCACGG 8270117 >seq20 Length=1106287 Score = 104 bits (114), Expect = 3e-17 Identities = 127/171 (74%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 73051 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 73110 ||||| | || ||||| |||||| | || || ||||| ||||||||||| || || ||| Sbjct 251024 GGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 250965 Query 73111 G--CAAA--CGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGG 73166 ||| || | | |||| |||| ||| || |||| | || |||||||| Sbjct 250964 AGTCAAGGTCGTGTAATTAATACC----TGGGCTGATATTATTAATCGTGCTAACCTTGG 250909 Query 73167 AATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 73217 |||||||||||||||||| | ||||| || |||||||| ||||||||||| Sbjct 250908 TATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 250858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572838912503520