Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7 194 2e-43 seq1 194 2e-43 seq8 87.8 2e-11 >seq7 Length=32205869 Score = 194 bits (214), Expect = 2e-43 Identities = 223/295 (76%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | |||| || || ||| Sbjct 30819370 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGG 30819429 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| ||||||||| ||||| ||||||||| |||||||||||| ||| ||||| Sbjct 30819430 ACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAG 30819489 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| ||| ||||| |||||| || | || | | |||||||| || Sbjct 30819490 AAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG-CG 30819548 Query 869813 GTG-TC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | || ||| || || || ||||| || ||||| | ||| || ||||| || |||| Sbjct 30819549 GAGATCTTGCG-AAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGT 30819607 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| ||||| | ||| |||| | || ||||| | | ||| || | ||| || Sbjct 30819608 ACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATT 30819662 Score = 113 bits (124), Expect = 6e-19 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 30819130 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 30819189 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | | ||| || || || || ||| | Sbjct 30819190 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCC------G 30819243 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| || | |||||| ||| || || || | || ||||| ||||||||| Sbjct 30819244 TCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 30819303 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||||||| ||| ||||||| | | ||| |||| || || || | || ||||| || Sbjct 30819304 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTA 30819362 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || ||||| || ||||| || | |||||||||| ||||||||| || || || | | Sbjct 30818803 TCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAGCTCCATCCAATCAAAAGGATTCGCC 30818862 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 ||| |||| || | || |||| | | || | || ||||||||||| ||| Sbjct 30818863 ACACCGTACAGCTTCCCGTACCCAAGCGCACCCAACAATCTATCCGCGACAAACTCTATG 30818922 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897 ||||| | ||| | | | ||||| || | | ||| |||||||| |||| |||| Sbjct 30818923 TACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCACGGCAGCGCATCGCACACA 30818982 Query 868898 AACTCTTTCTCGATCTCGACGGCCTC 868923 |||||| |||| ||||| || ||||| Sbjct 30818983 AACTCTCTCTCTATCTCCACCGCCTC 30819008 >seq1 Length=28801852 Score = 194 bits (214), Expect = 2e-43 Identities = 221/294 (75%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| | |||||| Sbjct 1184102 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGG 1184161 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| | |||| ||||| ||| ||||| || || ||||||||| Sbjct 1184162 ACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAG 1184221 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| |||| ||||| ||||||| || | || || |||| ||| | Sbjct 1184222 AAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACTGGCGG 1184281 Query 869813 GTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| ||||| |||||||| || ||||| | || || ||||| || ||||| Sbjct 1184282 ATGTCCTGCG-ACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 1184340 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| ||||| | || | |||| |||| || || | | || |||| ||||| Sbjct 1184341 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTT 1184394 Score = 129 bits (142), Expect = 7e-24 Identities = 177/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||||| ||||| | |||||||| || | |||||| || ||||||||||||||| Sbjct 1183853 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 1183912 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| || || || || ||| |||||| | || || | ||| || || || || | Sbjct 1183913 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 1183972 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTG 869389 || || |||||| || | ||||| ||||||||||| || |||||||||| Sbjct 1183973 CC------GTCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTT 1184026 Query 869390 TCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGG 869449 || | ||||||||| | | || ||||||| | | || || | || || || | ||| Sbjct 1184027 TCAAAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGG 1184086 Query 869450 AGCGAATA 869457 ||||| || Sbjct 1184087 AGCGAGTA 1184094 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||||| || ||| ||| || |||| || || Sbjct 28078672 GCAGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGAC 28078731 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| || |||||||||||||||||| Sbjct 28078732 ATGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG 28078782 >seq8 Length=22711823 Score = 87.8 bits (96), Expect = 2e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || ||||| ||||| |||| ||| | |||| || |||| ||| | |||| || | Sbjct 1001332 GCAGCCAATTACCTGAACATTAAGGGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAGA 1001274 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| ||| | || |||||||||||||||||||| ||||||||| Sbjct 1001273 CATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 1001222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106741678675548