Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 3e-14 seq6 89.7 4e-13 >seq4 Length=19951838 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||| ||||| | || || ||||| || ||| | ||| ||| | Sbjct 7827779 AATGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGAAGTTGAGAGTTC 7827720 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || |||||| ||||| || || | || ||||| Sbjct 7827719 TGATACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCA 7827660 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| |||| ||| || || ||||| || |||| | | || | || || ||||| Sbjct 7827659 GCAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTTGCTGACTACAA 7827600 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || |||||||| | ||| ||||| Sbjct 7827599 CATTCAGAAGGAATCTACCCTTCACTTGGTG 7827569 >seq6 Length=21175815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| |||||||| ||||| | |||||||| || || ||| ||||| |||| Sbjct 5335433 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 5335492 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| || || | || ||| Sbjct 5335493 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 5335552 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || || || || || | | | || |||| |||||| Sbjct 5335553 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 5335612 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || ||||| | || | || || || || |||| Sbjct 5335613 AACATTCAAAAAGAATCCACTTTGCATCTTGTACTCAGGCTTCGTGGTGGAA 5335664 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | || ||||| || ||||| |||| ||| |||||||| |||| Sbjct 13335049 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 13335108 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| |||||| | || ||||| ||||||||||| || || ||| | ||| |||| Sbjct 13335109 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGT 13335164 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/235 (68%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-- 110327 || ||||| || || || ||||| ||||||||||||| || || ||||| |||| Sbjct 5316716 AATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAGC 5316775 Query 110328 -CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 ||||| || ||| | | || || ||||| ||||| || || | || | Sbjct 5316776 TCTGAC---ACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCG 5316832 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || || || | || || | ||| || || || || || || | | | || |||| ||| Sbjct 5316833 GACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGAT 5316892 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||||||| || ||||| | || | || || || || |||| Sbjct 5316893 TACAACATTCAAAAAGAATCCACTTTGCATCTTGTACTCAGGCTTCGTGGTGGAA 5316947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412817227380092