Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 168 1e-35 seq1 165 1e-34 seq6 109 9e-18 >seq7 Length=32205869 Score = 168 bits (186), Expect = 1e-35 Identities = 208/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 30819130 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 30819189 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | | ||| || ||||| ||| ||| || Sbjct 30819190 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC---- 30819245 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| || | ||||||| || || || || |||| ||||| ||||||||| Sbjct 30819246 --GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 30819303 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| ||| ||| ||| | | ||| |||| ||| || || | || |||||||| Sbjct 30819304 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTAC 30819363 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 30819364 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 30819408 Score = 145 bits (160), Expect = 1e-28 Identities = 196/268 (73%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||| ||||||| | ||||| |||||||| ||||||||| Sbjct 30819415 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 30819474 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| |||||||| |||||| ||| ||||| |||||| || | || Sbjct 30819475 TCGGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 30819534 Query 796270 GAGACCCAGTGGACCGTG-TC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||||| | | | || ||| || || || ||||| || |||||||| || | Sbjct 30819535 GCCTCCCAGTGG-CGGAGATCTTGCG-AAAGATCAACTTCCTCAGCAGTCCAAAACGACG 30819592 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 | ||||| || |||||||| ||||| || || |||| | || ||||||| ||| | Sbjct 30819593 CTTCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 30819652 Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||| ||| || | ||| |||||||| Sbjct 30819653 GATCGGGATTTGGGGCTAGGAGCGGCTC 30819680 >seq1 Length=28801852 Score = 165 bits (182), Expect = 1e-34 Identities = 209/288 (73%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 ||||| ||||| | |||||||| || | |||||| || || ||||||||||||||||| Sbjct 1183859 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 1183918 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || || ||| |||||| | | || | ||| || || || ||| ||| || Sbjct 1183919 AATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGCCGTC- 1183977 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 |||||| || | ||||| || |||||||| || | |||||||| || | | Sbjct 1183978 -----GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAG 1184032 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 |||||||| | | || ||| ||| | | || || | ||| || || | ||||||||| Sbjct 1184033 GCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAG 1184092 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 1184093 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 1184140 Score = 158 bits (174), Expect = 2e-32 Identities = 199/269 (74%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || |||||||| | | |||| ||||| || ||||| || Sbjct 1184147 GCCTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCA 1184206 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||| |||||| |||| ||||| ||||||| || | || Sbjct 1184207 TCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGG 1184266 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| |||| ||| | |||||||||||||| || |||||||| || || Sbjct 1184267 GATTCCCACTGGCGGATGTCCTGCGAC-AGGTCGACCTCCTCCGCCGTCCAAAATGAAGC 1184325 Query 796329 CTCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 ||||| || |||||||| |||| || |||| |||| |||| || |||| || Sbjct 1184326 TTCGGCTTTCTTGTACATTTCCCAGATTTCCG--GGTACTGGATTGGAAACATGCAGAAT 1184383 Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || | |||||| | |||||||||||| Sbjct 1184384 CGGTCTGGGTTCGGGGTTAGCAGCGGCTC 1184412 >seq6 Length=21175815 Score = 109 bits (120), Expect = 9e-18 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| ||| Sbjct 7288260 TGAACTTGGTAACGGCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCA 7288201 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||||||||||||| | | |||||| |||||| | Sbjct 7288200 AGACCAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGTTGTACC 7288141 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || || ||||| | | | |||| || ||||||| || ||||| Sbjct 7288140 TAGCGAGACGAGACGCCTCTTGGGCTAATTTCTCGAAGATATCGTTGATGAAACTGTTCA 7288081 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||| || | ||||| || |||||||| || |||||| Sbjct 7288080 TGATGCCCATGGCCTTGCTGGAGATACCGATATCGGGATGAACCTGCTTCAGGACCTTGA 7288021 Query 1485710 AAA 1485712 ||| Sbjct 7288020 AAA 7288018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915731121626516