Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 seq4 89.7 4e-13 seq3240 84.2 2e-11 >seq6 Length=21175815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || |||||| | || |||||||||||||| |||| ||| |||||||| |||| Sbjct 13335049 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 13335108 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | || ||| | || || || ||||||||||||||||| ||| | ||| |||| || Sbjct 13335109 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCTG 13335168 Query 107769 AG 107770 || Sbjct 13335169 AG 13335170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || || || ||||| | || |||| | Sbjct 5327920 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACTATTACTCTGGAGGTGGAGAGTTCT 5327979 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||||| || || ||||| | || |||||| Sbjct 5327980 GATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAG 5328039 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| || || || ||||| ||||||| | || | || || || ||| Sbjct 5328040 CAGAGGCTCATTTTCGCTGGGAAGCAGCTAGAGGACGGCCGTACCCTTGCTGATTATAAC 5328099 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 5328100 ATCCAAAAGGAGTCCAC 5328116 >seq4 Length=19951838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || |||| || ||||| ||||| | || || ||||| || ||| | || Sbjct 7827789 TAAGAGGTGGAA--TGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGA 7827732 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 | ||| | ||||| ||| | | || || |||||| || || || || | Sbjct 7827731 AGTTGAGAGTTCTGATACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGAAT 7827672 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 || |||||||||||||| |||| ||| || || ||||| || || | | || | Sbjct 7827671 CCCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCT 7827612 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||||||||| ||||| ||||| | ||| ||||| Sbjct 7827611 TGCTGACTACAACATTCAGAAGGAATCTACCCTTCACTTGGTG 7827569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| | || || |||||||| ||| | || || ||| Sbjct 7833331 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAAAGCTC- 7833273 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| ||||| || || ||||| | || ||||| Sbjct 7833272 CGATACCATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 7833213 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||||||||| ||||| | ||| | || || || || Sbjct 7833212 GCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAA 7833153 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || ||||| |||| Sbjct 7833152 CATCCAGAAGGAGTCGACCCTGCACTTGGT 7833123 >seq3240 Length=620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| | || || |||||||| ||| | || || ||| Sbjct 293 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAAAGCTC- 351 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| ||||| || || ||||| | || ||||| Sbjct 352 CGATACCATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 411 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||||||||| ||||| | ||| | || || || || Sbjct 412 GCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAA 471 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || ||||| |||| Sbjct 472 CATCCAGAAGGAGTCGACCCTGCACTTGGT 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398853251809516