Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-16 seq3654 91.5 2e-13 seq4 91.5 2e-13 >seq6 Length=21175815 Score = 102 bits (112), Expect = 1e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||||||||| |||||||| || ||||| |||||||| ||||||||||| || ||| Sbjct 13335052 AAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAAGAT 13335111 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGAC 146227 |||||| | |||||||||| || ||||| || ||||| Sbjct 13335112 GGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGAC 13335152 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || || || || ||| | || || || | || Sbjct 5327693 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCCG 5327752 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || ||||| || ||||| ||||||| Sbjct 5327753 ATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAAC 5327812 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || ||||||||||| || | ||||| | || ||||| | Sbjct 5327813 AAAGATTGATCTTTGCCGGGAAACAATTAGAAGACGGCCGCACGTTGGCTGACTATAACA 5327872 Query 146212 TACAAAAAGAATCGACT 146228 | || ||||| || ||| Sbjct 5327873 TCCAGAAAGAGTCAACT 5327889 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || || || || ||| | || || || | | Sbjct 5265404 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCAG 5265463 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || || || || ||||| ||||||| Sbjct 5265464 ATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAAC 5265523 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || |||||||| || || | ||||| | || ||||||| Sbjct 5265524 AAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAATA 5265583 Query 146212 TACAAAAAGAATCGACT 146228 | || ||||| || ||| Sbjct 5265584 TCCAGAAAGAGTCAACT 5265600 >seq3654 Length=575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||||||||||||| |||| || ||| | | Sbjct 308 TGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG 367 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| ||| || || || || ||||| ||||| | Sbjct 368 ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 427 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || || || | || ||| || || | |||| ||||| | Sbjct 428 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 487 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| | || || || Sbjct 488 TCCAGAAAGAATCCACTCTTCACTTGGT 515 >seq4 Length=19951838 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||||||||||||| |||| || ||| | | Sbjct 7832647 TGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG 7832588 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| ||| || || || || ||||| ||||| | Sbjct 7832587 ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 7832528 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || || || | || ||| || || | |||| ||||| | Sbjct 7832527 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 7832468 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| | || || || Sbjct 7832467 TCCAGAAAGAATCCACTCTTCACTTGGT 7832440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||||||||||||| |||| || ||| | | Sbjct 7861389 TGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG 7861330 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| ||| || || || || ||||| ||||| | Sbjct 7861329 ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 7861270 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || || || | || ||| || || | |||| ||||| | Sbjct 7861269 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 7861210 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| | || || || Sbjct 7861209 TCCAGAAAGAATCCACTCTTCACTTGGT 7861182 Score = 87.8 bits (96), Expect = 3e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||| | | Sbjct 7827093 TGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGG 7827034 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || || || ||| ||| || ||||||||||| || || | Sbjct 7827033 ACACTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGC 7826974 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||||||||| || || | || ||| || || | ||||||| || | Sbjct 7826973 AGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAACA 7826914 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || || ||||| || | ||||| || || Sbjct 7826913 TTCAGAAGGAATCCACACTGCATTTGGTGTT 7826883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786118797624480