Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4 105 4e-18 seq6 96.9 2e-15 seq3654 93.3 3e-14 >seq4 Length=19951838 Score = 105 bits (116), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| || || || || || ||| Sbjct 7861608 AAAATCTGCATGCCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATG 7861667 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | ||||||||| | || || | |||||| || ||||| || | | ||| Sbjct 7861668 TTGTAGTCTGCAAGTGTGCGTCCATCCTCTAGTTGTTTACCAGCAAAGATGAGCCTTTGC 7861727 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||||| || || |||||| ||| | ||| |||| |||||| Sbjct 7861728 TGGTCTGGTGGGATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTC 7861786 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||| |||| ||||| || || || || | || ||||||||||||||||| Sbjct 7861787 GGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 7861846 Query 33750 A 33750 | Sbjct 7861847 A 7861847 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || ||| ||| || || ||||| || |||| Sbjct 7827780 CCACCTCTTAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCA 7827839 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||| || |||||||| | | ||||| ||| | || Sbjct 7827840 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 7827899 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || ||| | ||| |||| |||||| |||||| Sbjct 7827900 ATCCCTTCCTTGTCCTGAATCTTGGCTTTGA-CATTGTCAATAGTGTCGGAGCTTTCCAC 7827958 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||| || || | || |||||||||||||||||| Sbjct 7827959 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 7828007 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || ||||| ||||| | Sbjct 7861847 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGC 7861906 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| |||||||| || | | ||| || ||| | || Sbjct 7861907 AAGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGTCTCTGTTGGTCTGGTGG 7861966 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||||| ||| |||| ||||||| ||||| Sbjct 7861967 GATCCCTTCCTTGTCTTGAATCTTGGCTTTCA-CATTGTCAATGGTGTCGGAGCTTTCCA 7862025 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || ||||| || || || | || |||||||||||||||||| Sbjct 7862026 CCTCAAGAGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 7862075 Score = 95.1 bits (104), Expect = 8e-15 Identities = 168/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| || || || || || ||| Sbjct 7832866 AAAATCTGCATGCCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATG 7832925 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | ||||||||| | || || | |||||| || ||||| || | | ||| Sbjct 7832926 TTGTAGTCTGCAAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAATATGAGCCTTTGC 7832985 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||||| || || |||||| ||| | ||| |||| |||||| Sbjct 7832986 TGGTCTGGTGGGATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTC 7833044 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | |||||| |||| || || || || || || | || ||||||||||| ||||| Sbjct 7833045 -CGAGCTTCCACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 7833103 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 7832440 ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 7832499 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 7832500 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 7832559 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| | | ||| | |||||| ||| || |||| || || ||||| Sbjct 7832560 ATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 7832618 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||||||||| Sbjct 7832619 TCCGGTGAGGGTTTTCACAAAGATCTGCAT 7832648 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 7861182 ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 7861241 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 7861242 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 7861301 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| | | ||| | |||||| ||| || |||| || || ||||| Sbjct 7861302 ATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 7861360 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||||||||| Sbjct 7861361 TCCGGTGAGGGTTTTCACAAAGATCTGCAT 7861390 >seq6 Length=21175815 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| ||||||| ||| ||||| ||| || || ||||||||||| | Sbjct 5317174 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC 5317115 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || |||| || || || ||||| |||| ||||||||||| | || Sbjct 5317114 AAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGG 5317055 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||||| || ||||| || | || | ||| | |||||| ||| | Sbjct 5317054 GATCCCTTCTTTATCCTGGATTTT-TGCCTTGACGTTGTCAATGGTGTCAGAGCT---CT 5316999 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | |||||||| || || || | ||||| || ||||||||||| Sbjct 5316998 CGACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 5316947 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| ||||||| ||| ||||| ||| || || ||||||||||| | Sbjct 5335891 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC 5335832 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || |||| || || || ||||| |||| ||||||||||| | || Sbjct 5335831 AAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGG 5335772 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||||| || ||||| || | || | ||| | |||||| ||| | Sbjct 5335771 GATCCCTTCTTTATCCTGGATTTT-TGCCTTGACGTTGTCAATGGTGTCAGAGCT---CT 5335716 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | |||||||| || || || | ||||| || ||||||||||| Sbjct 5335715 CGACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 5335664 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| || |||| ||| ||||| || || || ||| Sbjct 4449557 AAAATCTGCATGCCACCCCTCAGACGCAAAACCAGATGAAGAGTTGATTCCTTCTGAATG 4449616 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | ||| || | | | || |||| || || || || || |||||||||||| Sbjct 4449617 TTGTAATCCGCGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGC 4449676 Query 33631 TGATCTTGCGGCACACCTTCTTTGTC 33656 || || |||| | ||||| ||||| Sbjct 4449677 TGGTCCGGCGGAATCCCTTCCTTGTC 4449702 >seq3654 Length=575 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 515 ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 456 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 455 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 396 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| | | ||| | |||||| ||| || |||| || || ||||| Sbjct 395 ATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 337 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||||||||| Sbjct 336 TCCGGTGAGGGTTTTCACAAAGATCTGCAT 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328684594548480