Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq4844 549 6e-152 seq2 223 1e-53 seq20 127 6e-25 >seq4844 Length=160129 Score = 549 bits (608), Expect = 6e-152 Identities = 716/983 (73%), Gaps = 8/983 (1%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | ||| || | ||||| ||||| |||| |||||||| ||||||| Sbjct 1518 TAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGAT 1459 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | | | | || || |||| || ||||| || |||||||| || || |||| Sbjct 1458 CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 1400 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || ||||| || || || |||||||| ||||| ||| || ||||||||||| || | Sbjct 1399 TAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 1340 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || || | | || | | ||| || || || | || || ||||| || || Sbjct 1339 TTTCTGGTGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCGATATG 1282 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 |||||| || ||||||||||| | ||||| || || || | | || | || | Sbjct 1281 GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCT 1222 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 1221 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 1162 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| || Sbjct 1161 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGT 1102 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 |||| | |||||||| |||||||||| |||| || | |||||| | || || || Sbjct 1101 TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 1042 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 || || ||||| | |||| | || ||||| || || || ||||| || |||||||| || Sbjct 1041 TGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 982 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 ||||||| | ||||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 981 CCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 922 Query 29235 GCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 | || || || | | ||| | | || || || ||| | ||| || |||| Sbjct 921 CTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTT 863 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 ||| || || ||||| ||||| |||||||| |||||||| ||||||||||| ||||| | Sbjct 862 ACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCC 803 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | |||||||||||||||||| |||||| ||| |||||| |||| |||||||| |||| Sbjct 802 GATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTG 743 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 29473 | ||||| || ||||| || |||||| |||| || || || || ||||| || || Sbjct 742 CTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACT 683 Query 29474 TGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTT 29533 | || ||||| || || ||||| || | | || | | |||||||| |||||||| | Sbjct 682 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCT 623 Query 29534 GGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTC 29593 |||||||| || | ||||| |||||||| || | ||||| |||||||| |||||||||| Sbjct 622 GGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 563 Query 29594 ATAACTTCCCACTTGATCTGGCT 29616 |||||||||| || || || ||| Sbjct 562 ATAACTTCCCTCTAGACCTAGCT 540 >seq2 Length=30838379 Score = 223 bits (246), Expect = 1e-53 Identities = 387/558 (69%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||| ||||| |||| |||||||| ||||||| || | | | | || || Sbjct 6214840 AACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 6214781 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || ||||||| || || ||||| || ||||| || || || || Sbjct 6214780 -TCTGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATTGACGGTATTCGTGA 6214722 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 || ||| ||| | ||| || ||||||||||| || || || || || | | || | Sbjct 6214721 ACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTAC 6214662 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || |||||||| || |||||||| Sbjct 6214661 TTCTGCA--GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAA 6214604 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | | || | || | |||||| | |||| || | Sbjct 6214603 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 6214544 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| || |||||||||||||| | || | || ||| || |||||| | Sbjct 6214543 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCATCCTTGGATTGTT 6214484 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| ||||||| || ||||| || || | |||||| | |||||||| | ||| Sbjct 6214483 GTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGATCTACCCAATTGGT 6214424 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| |||| || | |||||| | || || || || || ||||||| |||| | Sbjct 6214423 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 6214364 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || || | || || || ||||| || |||||||| ||||||||| | ||| | ||| | Sbjct 6214363 GTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCATAGCTTGT 6214304 Query 29197 GTGTTCGGTGGCTCGCTA 29214 || || || ||||| ||| Sbjct 6214303 GTATTTGGCGGCTCCCTA 6214286 >seq20 Length=1106287 Score = 127 bits (140), Expect = 6e-25 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 29434 TGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAAC 29493 |||||| |||| || || || || ||||| || || | || ||||| || || ||| Sbjct 251039 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 250980 Query 29494 CAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGC 29553 || || | | || | | |||||||| |||||||| ||||||||| || | ||||| Sbjct 250979 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGT 250920 Query 29554 GCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTG 29613 |||||||| || | ||||| |||||||| |||||||||||||||||||| || || || Sbjct 250919 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 250860 Query 29614 GCT 29616 ||| Sbjct 250859 GCT 250857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146657163428024