Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq4844 590 2e-164 seq2 286 1e-72 seq20 136 1e-27 seq1 107 5e-19 >seq4844 Length=160129 Score = 590 bits (654), Expect = 2e-164 Identities = 724/981 (74%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| |||| || || || ||||| ||||| || || |||||||| || Sbjct 1523 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1464 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || ||||| |||||||||||||| || Sbjct 1463 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1405 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| ||||| || || || || |||||| | || ||| |||||||||||||| Sbjct 1404 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1345 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || || | |||| | | ||| || || || | || || ||||| Sbjct 1344 TATTATTTCTGGTGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCG 1287 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || |||||||| || ||||||||||| | ||||| || || || | | || | Sbjct 1286 ATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATT 1227 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 || | |||||| | |||| || | ||||||||| || |||||||||||||| | Sbjct 1226 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 1167 Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || || || ||||| ||||||||| |||||| || |||||||||||||| ||||| || Sbjct 1166 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACT 1107 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 || || ||| | |||| ||| | |||||||| ||| || | ||||||| | || Sbjct 1106 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1047 Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260 || |||||| ||||| | |||| |||||||||||||||| || |||||||| |||||| Sbjct 1046 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 987 Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 || ||||||||| | || || |||||||| |||||||| || ||||| ||||| ||||| Sbjct 986 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 927 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 ||||| |||| || || | ||| | | ||||| || ||| | | |||| || Sbjct 926 GGTTC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGC 868 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 || |||| || || ||||| ||||| |||||||| || || |||||||| || ||||| Sbjct 867 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTT 808 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||| || | || ||||| || || ||||||||| |||||| |||||||||| | Sbjct 807 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCT 748 Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559 ||||||||||||||| || || || ||||| | || | || | ||||| ||||| || Sbjct 747 GGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTT 688 Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619 |||||| ||||| || || || ||||| || | |||| | | |||||||| ||| | Sbjct 687 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 628 Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679 ||| |||||||| ||| | |||||||||||||| || | || || ||||| |||||||| Sbjct 627 TACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 568 Query 19680 TGCTCATAACTTCCCACTTGA 19700 ||||||||||||||| || || Sbjct 567 TGCTCATAACTTCCCTCTAGA 547 >seq2 Length=30838379 Score = 286 bits (316), Expect = 1e-72 Identities = 410/573 (72%), Gaps = 6/573 (1%) Strand=Plus/Minus Query 18736 GTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGT 18795 ||||| || || || ||||| ||||| || || |||||||| ||||||| || | Sbjct 6214855 GTAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACT 6214796 Query 18796 CTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACAT 18854 | | | || ||| | ||| || ||||| |||||||||| ||| ||||| ||||| || Sbjct 6214795 TTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATAT 6214737 Query 18855 TGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGG 18914 ||| || || || || | |||| | | ||| |||||||||||||| || || || || Sbjct 6214736 TGACGGTATTCGTGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGG 6214677 Query 18915 AGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 || | |||| | | ||| || || || | || || ||||| || |||||||| Sbjct 6214676 TGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCG 6214619 Query 18973 AATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTC 19032 || ||||||||||| | ||||| || || || | | || | || | |||||| Sbjct 6214618 GCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 6214559 Query 19033 CTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATG 19092 | |||| || | ||||||||| || |||||||||||||| | || | || ||| Sbjct 6214558 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATG 6214499 Query 19093 CGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTT 19152 | ||||||||| |||||| || ||||||| |||||| ||||| || | || ||| | Sbjct 6214498 CATCCTTGGATTGTTGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTG 6214439 Query 19153 GTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACG 19212 |||| ||| |||||||||| ||| || | ||||||| | || || |||||| Sbjct 6214438 ATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 6214379 Query 19213 TTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATG 19272 ||||||| |||| ||||||| ||||||| || |||||||| |||||||| ||||||||| Sbjct 6214378 TTCAACTTCATGATTGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATG 6214319 Query 19273 CTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTA 19305 | || | ||| |||| || ||||| || ||| Sbjct 6214318 TTAGGCATAGCTTGTGTATTTGGCGGCTCCCTA 6214286 >seq20 Length=1106287 Score = 136 bits (150), Expect = 1e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 19546 AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAAT 19605 ||||| ||||| |||||||| ||||| || || || ||||| || | |||| | | Sbjct 251018 AGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 250959 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| ||| |||| |||||||| ||| | |||||||||||||| || | || || Sbjct 250958 GGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTT 250899 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||| ||||||||||||||||||||||| || || Sbjct 250898 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 250864 >seq1 Length=28801852 Score = 107 bits (118), Expect = 5e-19 Identities = 216/320 (68%), Gaps = 28/320 (9%) Strand=Plus/Minus Query 19208 GTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCC 19267 |||| ||||||| |||| |||||||||||||||| || | ||| || |||| | |||| Sbjct 20504928 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCC 20504869 Query 19268 ACATGCT-------CGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 ||||| | || | ||||||| ||| ||||| || || |||||| Sbjct 20504868 ACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCAC 20504819 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 |||| |||| || || | ||| | || ||||| || ||| | | ||||| || | Sbjct 20504818 GGTT-ACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGA 20504760 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 | |||| ||||| | ||| || || ||||| | ||||| ||||||||| ||||| Sbjct 20504759 AAGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTT 20504700 Query 19440 TGGTCGGCTTATT-----TTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTC 19494 | |||||||| |||| || || ||| |||| | |||| |||||||| Sbjct 20504699 T----GGCTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTC 20504644 Query 19495 TTTTTGGCTGCTTGGCCTGT 19514 || | | |||| ||||||| Sbjct 20504643 TTCCTAGATGCTGGGCCTGT 20504624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141140680768152