Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 seq3654 86.0 6e-12 seq4 86.0 6e-12 >seq6 Length=21175815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| ||||||| ||| ||||||| ||||||| || Sbjct 5316715 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 5316774 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | || || ||||| | || || || || || || ||||| || ||||| || Sbjct 5316775 CTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGA 5316834 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| | ||||| | | ||| || ||||||||||| | | | | | |||||| Sbjct 5316835 CCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTA 5316894 Query 25351 CAATATTCAAAAAGAATCCAC 25371 ||| ||||||||||||||||| Sbjct 5316895 CAACATTCAAAAAGAATCCAC 5316915 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| ||||| | ||||| || | ||||| ||||||| || | Sbjct 5335433 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 5335492 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||| || ||||| | || || || || || || ||||| || ||||| || Sbjct 5335493 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 5335552 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 ||||| | ||||| | | ||| || ||||||||||| | | | | | ||||||| Sbjct 5335553 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 5335612 Query 25352 AATATTCAAAAAGAATCCAC 25371 || ||||||||||||||||| Sbjct 5335613 AACATTCAAAAAGAATCCAC 5335632 >seq3654 Length=575 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | ||||||||| | || || | || || ||| Sbjct 306 CATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTC 365 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||||||| || || |||||||| || || ||||| Sbjct 366 TGACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCA 425 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||||| | || || || || ||||||| || | | | || || || Sbjct 426 GCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAA 485 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || ||||||||||| |||| || || Sbjct 486 CATCCAGAAAGAATCCACTCTTCACTTGGT 515 >seq4 Length=19951838 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | ||||||||| | || || | || || ||| Sbjct 7832649 CATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTC 7832590 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||||||| || || |||||||| || || ||||| Sbjct 7832589 TGACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCA 7832530 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||||| | || || || || ||||||| || | | | || || || Sbjct 7832529 GCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAA 7832470 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || ||||||||||| |||| || || Sbjct 7832469 CATCCAGAAAGAATCCACTCTTCACTTGGT 7832440 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | ||||||||| | || || | || || ||| Sbjct 7861391 CATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTC 7861332 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||||||| || || |||||||| || || ||||| Sbjct 7861331 TGACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCA 7861272 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||||| | || || || || ||||||| || | | | || || || Sbjct 7861271 GCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAA 7861212 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || ||||||||||| |||| || || Sbjct 7861211 CATCCAGAAAGAATCCACTCTTCACTTGGT 7861182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445067449534080