Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 315 1e-79 seq7 271 1e-66 seq6 86.0 9e-11 >seq1 Length=28801852 Score = 315 bits (348), Expect = 1e-79 Identities = 412/563 (73%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||| | ||||| |||| || | |||| || |||| |||| | Sbjct 1184412 GAGCCGCTGCTAACCCCGAACCCAGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 1184353 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| || || |||||||| || |||||||||||||| Sbjct 1184352 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCGGAGGAGGTCGACCT 1184294 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| | ||| ||| |||| || || | || ||||||| || ||||||| || Sbjct 1184293 -GTCGCAGGACATCCGCCAGTGGGAATCCCTAACCGCCGACGAGAAACACTTCATCACGC 1184235 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||||| || ||||||| ||||| ||||| ||| ||||| |||| | | Sbjct 1184234 ACGTGCTCGCCTTCTT-CGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGG 1184176 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||||||| |||||| | | ||||| ||| || ||||| ||||| ||||||||| Sbjct 1184175 TTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 1184116 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| |||| ||||||||||| | || || ||| | || || | | | Sbjct 1184115 GAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAACTCCGAC 1184056 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| || | | ||||||||| | || |||||||||| || ||||||||||| Sbjct 1184055 GAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAAAAAGGCCGAT 1183996 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGC 1456193 ||||| | || |||||| || ||| || || || || ||| | || | | Sbjct 1183995 TGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTGATAGCG 1183942 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 |||||| |||| || || || || |||||||||||||||||||| || |||||| | || Sbjct 1183941 TTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTGAAA 1183882 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 1183881 AAGCGCGGGTTAATGCCGGGCCT 1183859 >seq7 Length=32205869 Score = 271 bits (300), Expect = 1e-66 Identities = 405/562 (72%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||| || || | | | ||||| | |||| | ||||||| || | |||| | Sbjct 30819680 GAGCCGCTCCTAGCCCCAAATCCCGATCGATTTTG-CATGTTCCCGATTCAGTACCCACA 30819622 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||||||||||| | |||| |||| || || |||||||| || ||||| || || | Sbjct 30819621 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATC 30819563 Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||| || | | | |||||||| | | || | || |||||| || ||| ||| Sbjct 30819562 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAC 30819505 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| |||||||| || ||| ||| ||| |||||||| ||||||||| ||||| Sbjct 30819504 GCACGTGCTCGCCTTCTT-CGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAA 30819446 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||| |||||||| | | ||||| || || ||||| ||||| ||||||| Sbjct 30819445 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGCCA 30819386 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| |||| |||||||| || | || || ||| |||| ||| | | Sbjct 30819385 TCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCG 30819326 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| ||| ||||||| ||||||||| ||||| || | || || || ||| Sbjct 30819325 ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCA 30819266 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 |||||| | || |||||| || ||| || ||||| || ||| | | ||| Sbjct 30819265 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTCGCGGAGAGATTAATCG 30819212 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| || || ||||| || ||||| ||||| || |||||||||| Sbjct 30819211 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCA 30819152 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | |||||||| | ||||| || Sbjct 30819151 AAAAGCGCGGGTTAATGCCGGG 30819130 >seq6 Length=21175815 Score = 86.0 bits (94), Expect = 9e-11 Identities = 156/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||| || |||||||| || ||| | || | ||| |||| |||| ||||| Sbjct 7288022 CAAGGTCCTGAAGCAGGTTCATCCCGATATCGGT-----ATC-TCCAGCAAGGCCATGGG 7288075 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||||||||| || ||||||| || |||| | | | ||||| ||| || Sbjct 7288076 CATCATGAACAGTTTCATCAACGATATCTTCGAGAAATTAGCCCAAGAGGCGTCTCGTCT 7288135 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 || | | ||||||| |||||| || | |||||||||||||||||| | | Sbjct 7288136 CGCTAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGATT 7288195 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||| ||| ||| |||||| ||||||||| || ||||| |||| Sbjct 7288196 GGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCA 7288242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177343987296728