Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq7 129 8e-25 seq3 118 1e-21 >seq1 Length=28801852 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | |||||| | |||| | || | |||||| || | ||| ||| Sbjct 4158753 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 4158694 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| ||||||||||||| |||| ||||| || || || Sbjct 4158693 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 4158634 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 4158633 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 4158574 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 4158573 CCTTCAATACTATCATCTTTCATG 4158550 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | ||| |||||||| || || |||||| || ||| | || || | Sbjct 4158388 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 4158329 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||||| || || || || || ||||| || | || || | ||||||| Sbjct 4158328 TATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGCAACCCTCATCAAC 4158269 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| || |||| |||||| ||| | | ||||| ||||| || | ||||| Sbjct 4158268 ATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAGG 4158209 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || |||||||| Sbjct 4158208 GTTTTGAAGCCAAAATA 4158192 >seq7 Length=32205869 Score = 129 bits (142), Expect = 8e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | |||||||||||| || ||||||||| ||| || | || || Sbjct 11158331 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11158272 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| |||||| || || ||||| || |||||||| || | || | |||||| Sbjct 11158271 GTATGTTTTAATAGCAGAATCAATATCATCCTTGTGAATTCCAATAGAAACCCTCATCAA 11158212 Query 70110 CATATGCTGAGGTCGTTCTAC 70130 |||||||||||||| |||||| Sbjct 11158211 CATATGCTGAGGTCTTTCTAC 11158191 Score = 120 bits (132), Expect = 4e-22 Identities = 566/892 (63%), Gaps = 14/892 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| ||||| ||||| | || || ||||||||||| || |||| | || || Sbjct 30818779 TTTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAGC 30818838 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||| ||||| | || || || | || | | | | Sbjct 30818839 TCCATCCAATCAAAAGGATTCGCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAAC 30818898 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| || ||||| |||||||| |||||| ||| | |||||| || | | Sbjct 30818899 AATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAAC 30818958 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || || || || | ||||||| | || || || || ||||| | | || | Sbjct 30818959 GCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAAC 30819018 Query 39566 GATGTTACTACCTCATCACTCGGT---GGATGCAATAAA-TGTTTAAACATTAAGCAGGC 39621 | | ||| ||| || || | | ||||||| ||| ||| | ||| || Sbjct 30819019 GCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAGGCACGC 30819074 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||| || || || || |||||||||| || || ||||| || ||||| | ||| || Sbjct 30819075 GAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGG 30819134 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGC 39740 ||||| || |||||||||||||||||||| || |||||| | || || ||||| || | Sbjct 30819135 CATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGAAAATCC 30819193 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCATTATGTATCCA 39798 | || || ||||| || | | |||||| || || || | | | ||||| Sbjct 30819194 CCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC--CGTCGATCCA 30819251 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 || ||||| |||||||| || || || | || || || || | |||||| Sbjct 30819252 ATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAG 30819311 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 | | ||||| || ||||| | || || |||| | ||| |||||||| || Sbjct 30819312 ACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGA 30819371 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 |||||||| || || || || || || ||||| || | || || | | || || Sbjct 30819372 GTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGAC 30819431 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 ||| | || ||| | || | || || || || || || || || || || Sbjct 30819432 CTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAA 30819491 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098 || | || || | | || | || || || | || | | ||||| || Sbjct 30819492 GGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAG 30819551 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 ||||| || | ||| ||||| ||||| |||||||||||||| || || || |||||||| Sbjct 30819552 ATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACAT 30819611 Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 | ||| || | | || || || || || || ||||| || |||||| Sbjct 30819612 TTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATTT 30819663 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | || | |||||| | |||| | || | |||||| || | ||| ||| Sbjct 11158647 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 11158588 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| |||||||||||| |||| ||||| || || || Sbjct 11158587 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 11158528 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 11158527 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 11158468 Query 69931 CCCTCTATGCTATCATCTATCAT 69953 || || || ||||||||| |||| Sbjct 11158467 CCTTCAATACTATCATCTTTCAT 11158445 >seq3 Length=28715784 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | |||| ||||||| |||| | ||| |||||||| | ||| || Sbjct 24481720 TCCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCC 24481661 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || |||||||||||| || ||||| ||| || || |||||| ||| || Sbjct 24481660 ATTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGA 24481601 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||||| |||||||| || ||| || | |||||| |||| || |||||||| Sbjct 24481600 GAGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATAT 24481541 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || ||||| |||||| ||||| | |||||| |||||| Sbjct 24481540 GCCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 24481498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686867207672160