Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 105 8e-18 seq2 104 3e-17 seq1 89.7 6e-13 seq3 86.0 8e-12 >seq7 Length=32205869 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 111930 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 11158355 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 11158296 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 11158295 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 11158236 Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107 || || || | |||| ||| ||||| | ||| || |||| | | | || | || Sbjct 11158235 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 11158177 Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 11158176 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 11158117 Query 112167 G 112167 | Sbjct 11158116 G 11158116 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||||||||| || || | || |||||||| || || ||||| | || Sbjct 30819084 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 30819143 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 30819144 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 30819203 Query 122790 CGCAAACGC 122798 |||||||| Sbjct 30819204 AGCAAACGC 30819212 >seq2 Length=30838379 Score = 104 bits (114), Expect = 3e-17 Identities = 252/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || | | | ||| |||||| || ||| | | ||||| || || Sbjct 11989800 ATCAAAACGTCCAGGCCTCAATAAGGCAGAATCAAGAATGTCCGCCCTGTTAGTTGCAGC 11989741 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | ||||| |||||||| || || | | || |||| Sbjct 11989740 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAG 11989681 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629 || || ||||| |||||||| || | | | | |||| | | ||| | || || Sbjct 11989680 GGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 11989623 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | || ||||| || || ||| || ||| | | || ||| Sbjct 11989622 GCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA 11989563 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || || ||||| ||||||||||||||||| ||||| | | | || Sbjct 11989562 TCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 11989503 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || || || ||| || || ||||| || || Sbjct 11989502 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTT 11989443 Query 11810 CCTGGCTTACCCGCGAGAAG 11829 ||||| ||| ||||||| Sbjct 11989442 CCTGGAGGACCAACGAGAAG 11989423 >seq1 Length=28801852 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| | ||||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 4158401 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 4158342 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | | |||||| | | ||||||||||||| ||| ||| || || | || Sbjct 4158341 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 4158282 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||| | || || |||| | | | || | || | || |||| Sbjct 4158281 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 4158224 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 4158223 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 4158174 >seq3 Length=28715784 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 28140041 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 28139984 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 28139983 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 28139924 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| || ||| | ||||| | ||| | || || || || |||||| Sbjct 28139923 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 28139864 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAG 11744 ||||||| ||| ||||| | || ||||| Sbjct 28139863 ACAAACAACTCAACAAACTCTGAGGCAG 28139836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627993972662400