Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq2 89.7 6e-13 >seq7 Length=32205869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 367/568 (65%), Gaps = 13/568 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 30819084 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 30819143 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 30819144 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 30819203 Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 130205 || ||||| | | | ||| || |||| | | | || | ||| || | || Sbjct 30819204 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 30819259 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 ||||| || || || ||| || || || |||| ||| || | |||||| |||| Sbjct 30819260 CCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCT 30819319 Query 130266 TTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACC 130324 |||| | ||| ||||||||||| | |||| || || || ||||| |||| Sbjct 30819320 TTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA-- 30819376 Query 130325 ATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT-CA 130381 ||| ||||| || | ||||||| | ||| || ||| | ||| |||| | Sbjct 30819377 TGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGACCTCCG 30819436 Query 130382 TCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 || || || || ||||| | || || || ||||| | || || || || Sbjct 30819437 TCATGAACCTT-CCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGGCG 30819495 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCC 130501 || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 30819496 AGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATCT 30819555 Query 130502 TTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCC 130561 | ||| ||||| || ||||| ||||||||| | || || ||||| || | |||| Sbjct 30819556 TGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 30819615 Query 130562 CAGAGGTGGGGATACTTCAGGGGGAACA 130589 || | || || |||| | ||||||| Sbjct 30819616 CAAATTTGTGGGTACTGAATCGGGAACA 30819643 >seq2 Length=30838379 Score = 89.7 bits (98), Expect = 6e-13 Identities = 228/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 11989752 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 11989693 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGT 14230 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 11989692 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 11989635 Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCA 14290 || | || ||||| ||||||||||| | || || || || || ||| || ||| Sbjct 11989634 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 11989575 Query 14291 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 11989574 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 11989516 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | | | | || | || || || || | |||||| || || || ||| || | Sbjct 11989515 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 11989457 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 | |||||||| || ||||| || ||||||| |||| Sbjct 11989456 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 11989417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618397753748640