Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq3 98.7 1e-15 seq7 95.1 1e-14 seq1 86.0 7e-12 >seq2 Length=30838379 Score = 138 bits (152), Expect = 1e-27 Identities = 311/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 11989770 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 11989711 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 11989710 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 11989653 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 11989652 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 11989593 Query 9734 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 11989592 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAAC 11989534 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 11989533 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 11989475 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 11989474 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 11989415 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 |||||| || ||| | |||||||||| | |||||| || ||||| | || Sbjct 11989414 TTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTT 11989355 Query 9972 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 | || || | ||| || | |||| || ||||||| Sbjct 11989354 CCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 11989315 >seq3 Length=28715784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||| | ||||||| ||||||||| ||||||||||||||| | || ||| | Sbjct 24481151 AGAGATTTTGACTTTGATTATTTTGGCTTCAAAACCCTTGAGAGGTCGTACCTTTTGAAG 24481210 Query 104198 CTCGATGGT-GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || | ||| | |||| ||||| ||||||| ||| | || | | ||||| Sbjct 24481211 ATGGACAGTAGAGTTG-TAGAAAGGCCACAACACATGTTGATGAGGGTTTCTGTTGGTAT 24481269 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| || |||| |||||||| || | |||||| | |||||| || | ||| Sbjct 24481270 TCACAAAGATGACACTGATTCTGCTCTGAAAACATACCATTTGATGTCTCAGCATTGGTT 24481329 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| || || |||||||| |||||||| ||||| ||| ||||| Sbjct 24481330 CACTCATGCTACTCCAACCCTTTTCAATGCAGGTACTCCACAGCCCCA 24481377 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/217 (70%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 28140041 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 28139984 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 28139983 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 28139924 Query 9731 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || ||| || || | |||| ||| | ||||| ||| || | ||||| || Sbjct 28139923 CACGGTGCCTT--CGATTTGGCCTTCTCAAACAAATCCCT--CACTCTGGATGCGCCAAC 28139868 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 28139867 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 28139831 >seq7 Length=32205869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| ||||||||||||||| | ||| || | || || | | || Sbjct 11158125 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 11158184 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| | |||| || ||| | ||||| ||| | || | || || ||||| ||| Sbjct 11158185 AAGGTTG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACAAGGA 11158243 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||||| | | |||||| | | |||||||||| | ||||| || || Sbjct 11158244 TGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCCATGC 11158303 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || || |||||||| || ||||| ||||| Sbjct 11158304 ATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 11158342 >seq1 Length=28801852 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATG 104204 |||| || ||||||||| |||||||||| |||| | ||| |||| || | | | | | Sbjct 4158183 GACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAGGTC-CAAGG 4158241 Query 104205 GTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGG 104264 ||| | |||| || || | ||||| ||| | || || | || ||||| || Sbjct 4158242 AAAAGTTG-TAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGATTCACAAGG 4158300 Query 104265 AAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACG 104324 | ||||||||||||| | | |||||| | | |||||| ||| | ||| | || | Sbjct 4158301 ATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGTTTACCCATG 4158360 Query 104325 CAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || | || || || || |||||||| ||||||||| |||| Sbjct 4158361 CATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCA 4158400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583225483558560