Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 seq7 105 7e-18 >seq1 Length=28801852 Score = 150 bits (166), Expect = 2e-31 Identities = 380/564 (67%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| |||||||| | |||||| ||| Sbjct 1184373 TTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTTGG 1184314 Query 59622 TCCGTCGAGGAGATTGACCT--CGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACG 59679 | | |||||| | ||||| ||| ||| | | | | ||||| || | || Sbjct 1184313 ACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG--TGGGAATCCCTAACCGCCG 1184256 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 ||||| | || ||||||| | || || ||||||||||| || |||||||| || Sbjct 1184255 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCC 1184196 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 | ||||| | | | | || || || ||||| | ||||||| || | |||| Sbjct 1184195 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 1184136 Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || ||| || |||| ||||||||||| | |||||||||| | | || Sbjct 1184135 ACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAA 1184077 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || | || | | || || ||| || | | | || || ||| | || ||| | || Sbjct 1184076 ACGTACATAAAAAACTCCGACGAAAAGAGCCGCT-TATTTCGCGCCTTTGAAACGGTGCC 1184018 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 || ||| |||| || || |||||| | | ||||| || || |||| |||| Sbjct 1184017 GTGC-GTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATT 1183961 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | || ||||| ||||| ||||||||||| || |||||||| ||| ||||| Sbjct 1183960 CGCGGAGAGACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTG 1183901 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||| | |||||||| || | ||||||||||| | ||||| |||||||| Sbjct 1183900 CGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCT 1183841 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 || || || || || || ||||| Sbjct 1183840 AATCTCGCGAGATGAAGGACTCCA 1183817 >seq7 Length=32205869 Score = 105 bits (116), Expect = 7e-18 Identities = 295/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| |||| ||| ||| | || || ||||||||||| || || || || || Sbjct 30819524 GACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTC 30819465 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || || | | | | || | ||| |||||| | |||||||| || | ||| Sbjct 30819464 CTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTTC 30819405 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | || ||| || |||| ||||||||||| | ||||||||| | | || Sbjct 30819404 TACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 30819346 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | | |||| || | || || ||| |||| || | ||||| |||||| | || Sbjct 30819345 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 30819286 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 | || || | | ||||| ||||| | | ||||| || || |||| | || Sbjct 30819285 CTGC-GTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACT--TT 30819229 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | | || || ||||| |||||||| || || |||||||| || || || Sbjct 30819228 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 30819169 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || |||||||||||||| || | |||||||| | | ||||| |||||| | Sbjct 30819168 CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTT 30819109 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 ||| || || || ||||| ||||| Sbjct 30819108 GATCTCGCGAGATGAGGGTCTCCA 30819085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548491586823360