Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 6e-13 seq3 89.7 6e-13 seq8 86.0 7e-12 seq9 84.2 2e-11 seq5 82.4 8e-11 >seq7 Length=32205869 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 |||| ||| || || || | |||||||||||| || |||||||||| | |||||| Sbjct 30818778 CTTTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAG 30818837 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTC---TCCCCAAACTGTGC 74572 ||||||||| || ||||| ||| ||||||| | ||||| | ||||| | | Sbjct 30818838 CTCCATCCAATCAAAAGGATTCGCCACACCGTACA---GCTTCCCGTACCCAAGCGCACC 30818894 Query 74573 CATGAGGCGATCCGCCACAAATTGAATGTACTG---CGTCATTTCTCCCGCATCCATGCC 74629 || | | |||||| ||||| | |||||||| | ||| ||||| ||| ||| || Sbjct 30818895 CAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTC---CATTCATCCC 30818951 Query 74630 GATGAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTC 74677 | | ||||||||| || ||| | |||||| ||||| | ||| Sbjct 30818952 CACCAACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTC 30818999 >seq3 Length=28715784 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 19148874 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19148815 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 19148814 TGAGCTACGAAAGC 19148801 >seq8 Length=22711823 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 || |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 1175758 CAAACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 1175817 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| |||||||||| ||| Sbjct 1175818 CCAACTGAGCTACGAGAGC 1175836 >seq9 Length=18450785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1206901 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1206960 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 1206961 TGAGCTACGAGAGCAA 1206976 >seq5 Length=36147563 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 27612613 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 27612672 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 27612673 AACTGAGCTACGAGAGC 27612689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547182866071200