Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq4844 572 2e-158 seq2 300 2e-76 seq20 152 6e-32 seq3 138 1e-27 >seq4844 Length=160129 Score = 572 bits (634), Expect = 2e-158 Identities = 701/954 (73%), Gaps = 2/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||||||||||||||| | ||||| || | | | || || | | ||| Sbjct 1489 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 1431 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| ||||||||||| ||||| || Sbjct 1430 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTT 1371 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 1370 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA 1311 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || ||||| || |||||||| ||| | ||||| |||||| | ||| Sbjct 1310 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 1251 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 1250 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 1191 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || |||||||||||||| ||||||||| Sbjct 1190 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 1131 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | ||||||| || |||||| | |||| ||| ||||||||||| | Sbjct 1130 TCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 1071 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || || || ||||| ||||| || ||| |||||||||| Sbjct 1070 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAG 1011 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || |||||||||||||| ||| | || ||||| ||||| || || Sbjct 1010 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGC 951 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 950 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 891 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || ||||||| |||||| ||||| ||||| || || || Sbjct 890 ACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 831 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| |||||||| ||||| || | |||||||| |||||| |||||| || Sbjct 830 ATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 771 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||||| || || | || || || | |||||||| ||||| Sbjct 770 TCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 711 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| | Sbjct 710 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 651 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| ||||| |||| ||||| ||||||||| Sbjct 650 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGT 591 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 590 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 537 Score = 158 bits (174), Expect = 1e-33 Identities = 206/283 (73%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 124411 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 124352 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || ||||| || ||||| || || || | ||||| ||||| Sbjct 124351 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 124292 Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470 |||| || || || |||||| ||| |||| | | | || ||||| | | Sbjct 124291 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 124236 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 ||||| || || |||||| |||||||| || ||||||||||| |||||||| | Sbjct 124235 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 124176 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||||| ||| |||| ||||| |||||||||||| | || || Sbjct 124175 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 124133 >seq2 Length=30838379 Score = 300 bits (332), Expect = 2e-76 Identities = 397/548 (72%), Gaps = 2/548 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||||||||||||||| | ||||| || | | | || || | | ||| Sbjct 6214833 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 6214775 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || |||| || || || || ||||| ||||||||||| |||| || Sbjct 6214774 TTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACTTGTT 6214715 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | | ||||||||| ||||||||||| || || || || || | | || | || Sbjct 6214714 TCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA 6214655 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || ||||| || |||||||| ||| | ||||| |||||| | ||| Sbjct 6214654 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 6214595 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 6214594 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6214535 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | | || |||| ||||||||| ||||||||| Sbjct 6214534 GGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCATCCTTGGATTGTTGTTGCATAT 6214475 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || | || | ||||||| | |||||| | |||| ||| | ||||||||| | Sbjct 6214474 TCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGT 6214415 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || || || ||||| |||||||| ||| ||||||| | Sbjct 6214414 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTATAG 6214355 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || |||||||||||||| ||| | || |||| |||| ||||| Sbjct 6214354 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCATAGCTTGTGTATTTGGC 6214295 Query 176686 GGATCTCT 176693 || || || Sbjct 6214294 GGCTCCCT 6214287 >seq20 Length=1106287 Score = 152 bits (168), Expect = 6e-32 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 176913 CTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAA 176972 |||||| ||||| | ||| || |||| ||||| |||||| | || |||||||| ||||| Sbjct 251040 CTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAA 250981 Query 176973 CCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCG 177032 ||| ||||| | || | ||| || ||| ||| |||| ||||| |||| || Sbjct 250980 CCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCG 250921 Query 177033 TGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 177092 ||| ||||||||||||||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 250920 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 250861 Query 177093 TGCTGCT 177099 |||||| Sbjct 250860 AGCTGCT 250854 >seq3 Length=28715784 Score = 138 bits (152), Expect = 1e-27 Identities = 191/265 (72%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 24113570 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 24113629 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || ||||| || ||||| || || || | ||||| ||||| Sbjct 24113630 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 24113689 Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470 |||| || || || |||||| ||| |||| | | | || ||||| | | Sbjct 24113690 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 24113745 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 ||||| || || |||||| |||||||| || ||||||||||| |||||||| | Sbjct 24113746 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 24113805 Query 19531 CAACAAACTGTCTATCCATGACAGA 19555 ||||||| ||| |||| ||||| || Sbjct 24113806 CAACAAATTGTTTATCAATGACTGA 24113830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603457858414080