Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 9e-15 seq3654 84.2 2e-11 seq4 84.2 2e-11 >seq6 Length=21175815 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||||||||| || || || || || || | || || || ||| Sbjct 5335433 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 5335492 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| ||||| || || ||||| || || ||||| Sbjct 5335493 TCCGAC-----ACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGC 5335547 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| || | || |||||||| || ||| | || |||| |||| ||| ||| Sbjct 5335548 CGGACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCG 5335607 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCAT 27993 |||||||||| |||||||| |||||||||| Sbjct 5335608 ATTACAACATTCAAAAAGAATCCACTTTGCAT 5335639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || ||||| ||||| | || ||||| ||| || Sbjct 5327464 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 5327523 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || || || || ||||| || || | || || | Sbjct 5327524 GACACGATCGATAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACC 5327581 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| |||||||| |||| |||| |||| ||||||||| Sbjct 5327582 AGCAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGCCGATTACA 5327641 Query 27968 ACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||||||||||| ||| |||||| Sbjct 5327642 ACATCCAAAAAGAATCCACCTTGCAT 5327667 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || ||| || || | || || || ||| Sbjct 5316716 AATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAGC 5316775 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | ||| ||||||| ||||| || || ||||| || || ||||| Sbjct 5316776 TCTGAC-----ACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGC 5316830 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| || | || |||||||| || ||| | || |||| |||| ||| ||| Sbjct 5316831 CGGACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCG 5316890 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCAT 27993 |||||||||| |||||||| |||||||||| Sbjct 5316891 ATTACAACATTCAAAAAGAATCCACTTTGCAT 5316922 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || || ||||| | || ||||| ||| || Sbjct 4450300 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCC 4450241 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| | || ||| | Sbjct 4450240 GACACCATCGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGACC 4450183 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||||||||| | || |||| |||| |||| ||||||||| Sbjct 4450182 AGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA 4450123 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | |||||||| || || | ||| |||| | ||| | ||||| ||| Sbjct 4450122 ATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC 4450073 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || || ||||| | || ||||| ||| || Sbjct 4450528 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCC 4450469 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| | || ||| | Sbjct 4450468 GACACCATCGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGACC 4450411 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||||||||| | || |||| |||| |||| ||||||||| Sbjct 4450410 AGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA 4450351 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | |||||||| || || | ||| |||| | ||| | ||||| ||| Sbjct 4450350 ATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC 4450301 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || || ||||| | || ||||| ||| || Sbjct 4450756 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCC 4450697 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| | || ||| | Sbjct 4450696 GACACCATCGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGACC 4450639 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||||||||| | || |||| |||| |||| ||||||||| Sbjct 4450638 AGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA 4450579 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | |||||||| || || | ||| |||| | ||| | ||||| ||| Sbjct 4450578 ATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC 4450529 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || ||||| | || ||||| ||| Sbjct 4450987 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGC 4450928 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || |||| ||||| || || ||||| ||||| | || || Sbjct 4450927 TCCGACACCATCGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGG 4450870 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||||||||| | || |||| |||| |||| |||||| Sbjct 4450869 ACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATT 4450810 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| |||||||| || || | ||| |||| | ||| | ||||| ||| Sbjct 4450809 ACAATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC 4450757 >seq3654 Length=575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| || ||| || | || || |||||| | Sbjct 79 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 138 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || || ||||| || || | || || | Sbjct 139 GACACGATCGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATC 196 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || ||||||| |||||||| |||||| | || || | || | |||| | || ||| Sbjct 197 AACAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTG-CTGACTAC 255 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| || | |||||||| | ||| | ||||| ||| Sbjct 256 AACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGC 306 >seq4 Length=19951838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| || ||| || | || || |||||| | Sbjct 7832876 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 7832817 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || || ||||| || || | || || | Sbjct 7832816 GACACGATCGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATC 7832759 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || ||||||| |||||||| |||||| | || || | || | |||| | || ||| Sbjct 7832758 AACAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTG-CTGACTAC 7832700 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| || | |||||||| | ||| | ||||| ||| Sbjct 7832699 AACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGC 7832649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355841391218388