Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7 203 3e-47 seq1 150 2e-31 >seq7 Length=32205869 Score = 203 bits (224), Expect = 3e-47 Identities = 577/879 (66%), Gaps = 7/879 (1%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||| |||||| || |||||||| || |||| | ||| || Sbjct 30818779 TTTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAGC 30818838 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||| ||||| | | ||| | || | || || || | | | Sbjct 30818839 TCCATCCAATCAAAAGGATTCGCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAAC 30818898 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 |||| || || ||||| ||||| ||||| ||||| | ||| | || || || | || Sbjct 30818899 AATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAAC 30818958 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || ||||| | || ||||||| ||||| || || || | | || Sbjct 30818959 GCGCAC-GGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAA 30819017 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 | || | | | || | | | || | || | | |||| | ||||| || Sbjct 30819018 CGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGTACAACAGGCACGCGAA 30819077 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 ||| || || | ||| || |||| || | |||| ||||| || || |||||||| |||| Sbjct 30819078 ATCGCAGTGGAGACCCTCATCTC-GCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCA 30819136 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 |||| || | |||||| ||||||||||| ||| ||| ||| || ||||| || || | Sbjct 30819137 TTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCT 30819196 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734 | ||| |||||||| | ||||| | |||| | || | | | | ||||| | Sbjct 30819197 CCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGT-CT--CCGAGCCGTCGATCCAAT 30819253 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT 4794 |||| ||||| | ||||| || ||||| |||| || | || |||| ||| | Sbjct 30819254 TTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGAC 30819313 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 | ||||| | ||||| || ||||| |||| || || |||||||| || | Sbjct 30819314 GGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGT 30819373 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 | || || || || || || || || ||||| ||| | ||| || | || || || | Sbjct 30819374 GGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGACCT 30819433 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | || ||| | | | ||| ||| || || ||||| |||||| || || | Sbjct 30819434 CCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGG 30819493 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 | | || || | | |||| || ||||||| | || | ||||||| | | || Sbjct 30819494 CGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGAT 30819553 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 ||| | | ||||||||| ||| ||||||||||||||||||| ||||| |||||||| Sbjct 30819554 CTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 30819613 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 |||||| | || ||||||||||| | ||| ||||| Sbjct 30819614 CCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 30819652 >seq1 Length=28801852 Score = 150 bits (166), Expect = 2e-31 Identities = 587/912 (64%), Gaps = 13/912 (1%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||||||||| |||| ||| || |||||||| || || |||| | |||||| Sbjct 1183511 TTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAAC 1183570 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||||||||| || || ||| || | ||| || || | | | Sbjct 1183571 TCCATCCAATCAAACGGATTCGTCACGCCGTACACCTTCCCGCACCCGAGCGCGCCCAAC 1183630 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 || | || || ||||| ||||| ||||| ||||| | | | ||| || || | ||| Sbjct 1183631 AACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAAT 1183690 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || ||||||| || ||||| ||||| || || || | | ||| Sbjct 1183691 GCGCAC-GGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTAT 1183749 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAA 4554 | | | || | | ||| || || || | | |||| || ||||| | Sbjct 1183750 CCCCATCACGCGCTCCTCGCTTAATTTGTTC-CTCAGCAAGCTGTACAACAAGCACGCGA 1183808 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 |||| || || | ||||| |||| || | || || ||||| || || |||| || ||| Sbjct 1183809 AATCGCAGTGGAGTCCTTCATCTC-GCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGC 1183867 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGAATATGC 4671 ||||| || | |||||| | ||||||||| ||| | || || || |||| |||||| | Sbjct 1183868 ATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAA--GAATATCC 1183925 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 |||| ||| ||||||||||| | || | |||| | | | | | | |||| Sbjct 1183926 CTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATG---TCTCCGAGCCGTCGATCC 1183982 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | |||| ||||| | || ||||| ||||||||| | || | | ||| ||||| Sbjct 1183983 AATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATA 1184042 Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 | || ||||| | || || || || || |||| || || |||||||| | Sbjct 1184043 AGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGG 1184102 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 | || || || || || || || || || ||||| ||| | || || | ||||| | Sbjct 1184103 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGA 1184162 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| || || || | | | ||||||| || || || || ||| || || | Sbjct 1184163 CTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGA 1184222 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | || | || || | || |||| | ||||| | | || || ||| ||| | | Sbjct 1184223 AGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACTGGCGGA 1184282 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 || | | | || || || || | |||||||| || ||||| ||||| ||||||| Sbjct 1184283 TGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACA 1184342 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAA 5151 | ||| || || || ||||| || |||| ||| |||| || ||| || || | Sbjct 1184343 TTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTTCGGGGTTA 1184402 Query 5152 GAAGCGGTTCTT 5163 | ||||| |||| Sbjct 1184403 GCAGCGGCTCTT 1184414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427024388593052