Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7 141 1e-28 seq1 116 5e-21 seq3 91.5 2e-13 >seq7 Length=32205869 Score = 141 bits (156), Expect = 1e-28 Identities = 390/595 (66%), Gaps = 2/595 (0%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || ||||| ||||||| || || ||||| || ||||| | Sbjct 30819070 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 30819129 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||||| || || ||||||||||||||||| | ||| ||| | || || ||||| Sbjct 30819130 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCTGAGAAGAA 30819188 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || || || ||| ||||| ||| | | |||||| || || | | | || || Sbjct 30819189 AATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTCGAT 30819248 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| | ||||| || ||||| || || || | || || || || | ||| Sbjct 30819249 CCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAA 30819308 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||| ||| ||||| | | ||||| | |||||| |||| | || |||||||| Sbjct 30819309 GAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 30819368 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||| || || || || || || || || ||||| || | || || | || ||| Sbjct 30819369 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTG 30819428 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 |||||||| || | | | || | ||||| || || || || || || || Sbjct 30819429 GACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAA 30819488 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATT 48619 || || | || || | | || | || |||| | || || | ||||| Sbjct 30819489 GAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 30819548 Query 48620 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 || ||||| || | ||| ||||| ||||| |||||||| || || || ||||| || || Sbjct 30819549 GAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTA 30819608 Query 48680 CATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 ||| | ||| || | ||| || || ||||| || ||||| || |||||| Sbjct 30819609 CATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATTT 30819663 Score = 109 bits (120), Expect = 8e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | ||| ||||||||||| || |||||| ||| || | | || Sbjct 11158331 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11158272 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| |||||| || || || || | ||| |||||||| | | || | ||||| Sbjct 11158271 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11158213 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||||||||||||||||||| || Sbjct 11158212 ACATATGCTGAGGTCTTTCTAC 11158191 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 11158648 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 11158589 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| || ||||||||| ||||||||||||| |||| ||||| || || || Sbjct 11158588 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 11158529 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || ||||| || || ||||| Sbjct 11158528 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 11158469 Query 78338 ACCCTCTATACTGTCATCCATCAT 78361 || || ||||| ||||| |||| Sbjct 11158468 TCCTTCAATACTATCATCTTTCAT 11158445 >seq1 Length=28801852 Score = 116 bits (128), Expect = 5e-21 Identities = 375/580 (65%), Gaps = 4/580 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| || || || |||||||||| |||| ||||| || || || Sbjct 1183799 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 1183858 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| || || ||||| | ||||||||| || |||| || || ||| Sbjct 1183859 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 1183918 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| ||||| ||| ||||| || | |||||||| || | || || || || Sbjct 1183919 AATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAA--TGTCTCCGAGCCGT 1183976 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| | | |||||||| ||||| || || || |||| ||||| | || Sbjct 1183977 CGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGC 1184036 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||| | | | ||||| | | | ||| | ||| || |||| | || |||| Sbjct 1184037 GAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACA 1184096 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 |||||||||| || || || || || || || || ||||| || | ||| || | || Sbjct 1184097 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGA 1184156 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || || || | || | | || | || || || |||||||| || | Sbjct 1184157 CTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGG 1184216 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || || || | || || | || || | ||| |||| || || || | ||| | Sbjct 1184217 CGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACT 1184276 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 ||| || | || | || || || || || ||||||||||| || || ||||| | Sbjct 1184277 GGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCT 1184336 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | ||||| | ||| || || ||| |||||||| || || Sbjct 1184337 TGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 1184376 Score = 114 bits (126), Expect = 2e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | ||| ||||||||||| ||||||||| || ||| | | || | Sbjct 4158388 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 4158329 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 4158328 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 4158270 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 78576 |||||| || |||||||| | | ||| | || | ||||| | ||| || | |||| Sbjct 4158269 CATATGTTGGGGTCTTTCTA-CAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 4158211 Query 78577 AAGTTTTAAAACCAAAATA 78595 ||||| || |||||||| Sbjct 4158210 GGGTTTTGAAGCCAAAATA 4158192 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 4158753 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 4158694 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| |||||||||||| |||| ||||| || || || Sbjct 4158693 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 4158634 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || || | ||| || ||||| ||||| || || Sbjct 4158633 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 4158574 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 4158573 CCTTCAATACTATCATCTTTCATG 4158550 >seq3 Length=28715784 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| |||||| || | ||| | | ||||||||| |||||| |||| |||| || Sbjct 24482371 CTCTTCTTCATACTGGGAATACAAGTGCTCAAATTCAATTCCCCAGGAATCAGCCAAACC 24482312 Query 77957 AGG-GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 || |||| || | ||||| | ||| ||||| | ||||| || | |||| || ||||| Sbjct 24482311 AGAAGCAT-CACTAGGGCAAAACAAGGACCATTTTCCATCATCTCTGACTCTTTCCATAA 24482253 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||||| | ||| |||||| ||| ||||| || Sbjct 24482252 AGAGATCAGGAACCCAGAGAGCATAAAAGAGATCACG 24482216 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||||| || |||| |||| | ||| | ||| || | ||| || Sbjct 24481719 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 24481660 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || | ||||||||||||| || ||||| || || || |||||| |||||| Sbjct 24481659 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAG 24481600 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| || || Sbjct 24481599 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 24481540 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || |||||||| ||||| | |||||| |||||| Sbjct 24481539 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 24481498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694626737804160