Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq4844 706 0.0 seq2 349 4e-91 seq3 232 7e-56 seq20 158 1e-33 seq1 140 4e-28 seq8 107 2e-18 >seq4844 Length=160129 Score = 706 bits (782), Expect = 0.0 Identities = 753/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| ||||| || || || || | || | |||||||| || || || Sbjct 1523 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1464 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| | | | | | || ||| | ||| || || ||||||||||| | ||||| Sbjct 1463 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTC 1406 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || || || || || ||||| || |||| || || | |||||||||| Sbjct 1405 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1346 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || |||||||| |||| ||| ||||| ||||| ||| |||| || ||||| | Sbjct 1345 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 1286 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| ||| | || |||||| | ||||| || ||||||| | || ||| Sbjct 1285 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1226 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||||||||||||||||||||||||| || || Sbjct 1225 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1166 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||||||||||||| || ||||| || |||||||| || ||||||| || Sbjct 1165 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 1106 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || |||| || |||||||||| ||| ||||||| |||||||| || | Sbjct 1105 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1046 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 ||||||| || ||||| | |||| | || ||||||||||||||||||||||| ||||||| Sbjct 1045 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 986 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | ||||| ||| | |||||||| ||||| || ||||| || || |||||||| ||||| | Sbjct 985 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 926 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| || ||| || | | || ||||| |||||||| || || | Sbjct 925 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 866 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||| || || ||||| || ||||||||||| |||| Sbjct 865 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 806 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 | || |||| |||||||| ||| |||||||| || ||||| | || |||||||| | Sbjct 805 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 746 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| || ||||||||||| |||||| | || ||||||| ||||| |||| Sbjct 745 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 686 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 || | || |||||||| |||||||| || | | ||| |||| |||||||| | || | Sbjct 685 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 626 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 ||||||| || || | || |||||| || || |||||||| ||||| || ||||||| Sbjct 625 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 566 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCT 164914 |||| ||||||||||| ||||| |||||| Sbjct 565 CTCATAACTTCCCTCTAGACCTAGCTGCT 537 Score = 558 bits (618), Expect = 4e-154 Identities = 722/992 (73%), Gaps = 4/992 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| | Sbjct 35862 AGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTC 35921 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || |||||||| || ||| | Sbjct 35922 GCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTA 35981 Query 165300 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358 || ||||||||| | || || ||||| ||| | || || |||||||| ||||| || | Sbjct 35982 GCCAGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCCGCAGTTTCGACTCCTGCTAA 36040 Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418 | | | |||||| | || | |||||||||||||| | ||||| || || | || Sbjct 36041 TAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG 36100 Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 165478 |||||| ||| | || || || ||||||||||| || || ||||| || || | ||| || Sbjct 36101 CTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAAT 36160 Query 165479 AGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATG 165537 |||||||||| | || || |||||||| || || || || | | || ||||| |||| Sbjct 36161 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAAT-TGCGACCTTATAATG 36219 Query 165538 CTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGG 165597 | || || ||||||| ||| |||||||| || ||| ||| || || || ||||| || | Sbjct 36220 CAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAG 36279 Query 165598 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 165657 | || || |||||||| || || || || || || || || || |||||| | | Sbjct 36280 GTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCC 36339 Query 165658 TCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAG 165717 | || |||||||||| ||||| ||||| |||| |||||||| |||||||| || || | Sbjct 36340 TTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCG 36399 Query 165718 GTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 165777 || | || |||| || |||| | |||||||||||| | ||| ||||| |||||||| | Sbjct 36400 GTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTAT 36459 Query 165778 ATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAA 165837 |||||||||||| |||||||| ||| || ||| | || || | || |||| Sbjct 36460 TTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAA 36519 Query 165838 CTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCA 165897 | ||||| |||||||| |||||||| || |||||||| || ||||| ||||||| || Sbjct 36520 CCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCA 36579 Query 165898 ATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTT 165957 |||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| Sbjct 36580 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTG 36639 Query 165958 CTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGA 166017 || |||| | | || || || || || || ||||||||||| || || || ||||| | Sbjct 36640 CTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAA 36699 Query 166018 TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATG 166077 | | || || || ||||| || ||||| || ||||| || ||||| || || | || | Sbjct 36700 TCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACG 36759 Query 166078 AAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTG 166137 | || | ||||| ||| |||| || ||| || |||||||| ||| || | ||||||| Sbjct 36760 AGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 36819 Query 166138 AAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | || || | || | || ||||| |||||| Sbjct 36820 AGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 36851 >seq2 Length=30838379 Score = 349 bits (386), Expect = 4e-91 Identities = 405/541 (75%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 163970 GGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCA 164027 |||||||| || || ||||||| |||| | | | | | || ||| | ||| || || | Sbjct 6214825 GGTTGGTTTGGTGTTTTGATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTA 6214768 Query 164028 TCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTT 164087 |||||||||| | ||||||||| || || || || || || || |||| || ||| | Sbjct 6214767 TCGCCTTCATTGTTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACTTGTTTCTGAAT 6214708 Query 164088 CGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCG 164147 | || | ||||||||||| || || |||||||| |||| ||| ||||| ||||| | Sbjct 6214707 CTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAG 6214648 Query 164148 GTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTG 164207 || |||| || ||||| || |||||||| ||| | || |||||| | ||||| || | Sbjct 6214647 GTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCG 6214588 Query 164208 GTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTG 164267 |||||| | || |||| | |||||| | |||| | | |||||||||||||| Sbjct 6214587 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 6214528 Query 164268 AGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTC 164327 ||||||||||| || |||| | ||||||| |||||||||| || ||||| || |||| Sbjct 6214527 AGTGGGAACTTAGTTTCCGTATGGGTATGCATCCTTGGATTGTTGTTGCATATTCAGCTC 6214468 Query 164328 CTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 164387 ||| || ||||||| | | || ||| || |||| || | |||||||| ||| |||| Sbjct 6214467 TTGTTGCAGCAGCGACTACTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 6214408 Query 164388 ATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGC 164447 ||| |||||||| || |||||||| || ||||||| |||| | || || ||||||||| Sbjct 6214407 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTATAGGCTGAGC 6214348 Query 164448 ACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTC 164507 |||||||||| |||||||| ||||| ||| | ||| |||| |||| |||||||| || | Sbjct 6214347 ACAACATCCTTATGCACCCATTCCACATGTTAGGCATAGCTTGTGTATTTGGCGGCTCCC 6214288 Query 164508 T 164508 | Sbjct 6214287 T 6214287 >seq3 Length=28715784 Score = 232 bits (256), Expect = 7e-56 Identities = 369/538 (69%), Gaps = 36/538 (7%) Strand=Plus/Minus Query 165668 AGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGG 165727 |||||| ||||| ||||| |||| |||||||| |||||||| || || ||| | || || Sbjct 8270069 AGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGG 8270010 Query 165728 CGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGG 165787 || || |||| | |||||||||||| | ||| ||||| |||||||| | ||||||||| Sbjct 8270009 CGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGG 8269950 Query 165788 TGAACAAGCAAACACTTT--------------CAAAGCA--------------------- 165812 ||| |||||||| || ||| ||| Sbjct 8269949 TGATGGTGCAAACACATTACGTGTTTTTAACCCAACGCAAGCCGAAAACACATTCCGTGC 8269890 Query 165813 -TTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTC 165871 ||| | || || | || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 8269889 TTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTC 8269830 Query 165872 TCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGT 165931 ||| || ||||| ||||||| |||||| |||||| | || ||||||||| | ||||| Sbjct 8269829 TCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 8269770 Query 165932 TCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCG 165991 || || | || | |||| ||| || |||| | | || || || | || || || Sbjct 8269769 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCAAAACCTACG 8269710 Query 165992 TGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTT 166051 ||||||||| || | || || || || | || || || ||||| || ||||| || || Sbjct 8269709 TGCTTATGACTTCATTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTTGAGACTTT 8269650 Query 166052 CTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCA 166111 ||| || ||||| || || | || || || | ||||| ||| |||| || ||| || Sbjct 8269649 CTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 8269590 Query 166112 ACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||||||| ||| || | |||||||| || || | || | || ||||| |||||| Sbjct 8269589 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 8269532 Score = 152 bits (168), Expect = 6e-32 Identities = 210/291 (72%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| | Sbjct 8270400 AGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTC 8270341 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || |||||||| || ||| | Sbjct 8270340 GCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTA 8270281 Query 165300 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358 || ||||||||| | | ||| ||| ||||| | || || |||||||| ||||| | | Sbjct 8270280 GCCAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTACTAA 8270222 Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418 | | | |||||| | || | |||||||||| ||| | ||||| || || | || Sbjct 8270221 TAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCTTGAAGCACAAGGAGATTTTACTCG 8270162 Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTT 165469 |||||| ||| | || || || ||||||||||| || ||||||| || || Sbjct 8270161 CTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTTTCCACGGTGCTTT 8270111 >seq20 Length=1106287 Score = 158 bits (174), Expect = 1e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 164725 TATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTT 164784 || |||||| |||||| | || ||||||| ||||| |||||| | || |||||||| || Sbjct 251043 TAACTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTT 250984 Query 164785 CAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAA 164844 |||||| || | | ||| |||| |||||||| | || |||||||| || || | || Sbjct 250983 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAA 250924 Query 164845 CCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGA 164904 |||||| || || |||||||| ||||| || ||||||||||| ||||||||||| || Sbjct 250923 TCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 250864 Query 164905 CCTTGCTGCT 164914 ||| |||||| Sbjct 250863 CCTAGCTGCT 250854 >seq1 Length=28801852 Score = 140 bits (154), Expect = 4e-28 Identities = 205/290 (71%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 165880 TTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCA 165939 |||| ||||| | |||||| |||||| | || || |||||| | ||||| || || | Sbjct 21789399 TTGGGGTTGCTATTTCCAATAAACGTTGGTTACATTTTTTTATGTTATTTGTACCAGTAA 21789340 Query 165940 TGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATG 165999 || | |||| ||| || |||| | | || || || || || || |||||||||| Sbjct 21789339 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATG 21789280 Query 166000 ATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGA 166059 | || || || ||||| || | || || || ||||| || ||||| || ||||| || | Sbjct 21789279 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAA 21789220 Query 166060 AAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATG 166119 |||| || || | || || || | ||||| ||| |||| || ||| || ||||||| Sbjct 21789219 AAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 21789160 Query 166120 AGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | ||| || | |||||||| || || | || | || ||||| |||||| Sbjct 21789159 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 21789110 Score = 140 bits (154), Expect = 4e-28 Identities = 205/290 (71%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 165880 TTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCA 165939 |||| ||||| | |||||| |||||| | || || |||||| | ||||| || || | Sbjct 21790586 TTGGGGTTGCTATTTCCAATAAACGTTGGTTACATTTTTTTATGTTATTTGTACCAGTAA 21790527 Query 165940 TGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATG 165999 || | |||| ||| || |||| | | || || || || || || |||||||||| Sbjct 21790526 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATG 21790467 Query 166000 ATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGA 166059 | || || || ||||| || | || || || ||||| || ||||| || ||||| || | Sbjct 21790466 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAA 21790407 Query 166060 AAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATG 166119 |||| || || | || || || | ||||| ||| |||| || ||| || ||||||| Sbjct 21790406 AAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 21790347 Query 166120 AGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | ||| || | |||||||| || || | || | || ||||| |||||| Sbjct 21790346 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 21790297 Score = 113 bits (124), Expect = 5e-20 Identities = 212/313 (68%), Gaps = 18/313 (6%) Strand=Plus/Minus Query 164414 ACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCAT 164473 || ||||||| |||| | || |||||||||||||||| ||| || |||| | ||||| Sbjct 20504926 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCCAC 20504867 Query 164474 ATGCT-------CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 ||| | ||| |||| |||| |||||||||||| || |||||||| Sbjct 20504866 ATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCACGG 20504817 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 || |||| || ||| || | || || ||||| |||||||| || | || | | Sbjct 20504816 TTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAAG 20504757 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 |||| ||||||| || || ||||| ||| | || || | ||||| | ||| ||||| Sbjct 20504756 ATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTGG 20504697 Query 164647 TCGTCTGAT-TTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 |||| |||| ||| ||| ||| ||| || | ||| | || |||||||| | Sbjct 20504696 CTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCTAG 20504637 Query 164706 CAGCATGGCCTGT 164718 || ||||||| Sbjct 20504636 ATGCTGGGCCTGT 20504624 >seq8 Length=22711823 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 161546 GACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGT 161605 || ||||||||||| || || |||||||||||||| || || ||| | ||| || || Sbjct 18100506 GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGC 18100447 Query 161606 CGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 161665 || || || ||||| ||| |||| || || || | || ||||| | || ||||| Sbjct 18100446 CGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCA 18100387 Query 161666 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 161725 || |||||||| || || | ||||| || |||||| | |||||||| |||| Sbjct 18100386 GATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA 18100327 Query 161726 TATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 161772 || || || ||||| |||||| || || | || ||||| || || Sbjct 18100326 TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCT 18100280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 165642 ATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCAC 165701 || || || ||| | || || ||||||||| |||| | ||| | ||||||||||| Sbjct 5468342 ATATTTCGGTTCATCCTTTTTTTCCAAGGGTCTTATAAGTAGACATTAAATCCCTTTCAT 5468401 Query 165702 ATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACA 165761 |||||||| || || ||| | ||||| | | ||| | ||| |||||||| ||| Sbjct 5468402 ATGATGGGAGTTGCTGGTGTATTAGGTGATGTTCAGCTATGTGCTATTCATGGCACTACT 5468461 Query 165762 GTAGAGAATACTTTGTATGAAGATGGTGA 165790 |||| |||||||| | |||||||| ||| Sbjct 5468462 ATAGAAAATACTTTATTTGAAGATGCTGA 5468490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557620634026080