Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq162739 104 5e-17 seq142325 104 5e-17 seq88898 104 5e-17 seq65878 104 5e-17 seq52366 104 5e-17 seq38455 104 5e-17 seq37171 104 5e-17 seq18720 104 5e-17 seq8767 104 5e-17 seq142324 95.1 3e-14 seq8768 91.5 3e-13 seq589 91.5 3e-13 >seq162739 Length=1065 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 73 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13 CCCACGGTGGGC 2 >seq142325 Length=2643 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 60 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 61 CCCACGGTGGGC 72 >seq88898 Length=3599 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 60 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 61 CCCACGGTGGGC 72 >seq65878 Length=8164 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 3315 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 3256 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 3255 AGCCCCACGGTGGGC 3241 >seq52366 Length=328 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 322 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 263 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 262 CCCACGGTGGGC 251 >seq38455 Length=6535 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5956 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6015 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6016 CCCACGGTGGGC 6027 >seq37171 Length=2357 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1338 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1279 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1278 CCCACGGTGGGC 1267 >seq18720 Length=12239 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5122 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5181 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5182 CCCACGGTGGGC 5193 >seq8767 Length=1856 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1431 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1372 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1371 CCCACGGTGGGC 1360 >seq142324 Length=5660 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||| || || || |||| || |||||| ||||||||||| Sbjct 5538 GCCCGTCTAGCTCAGTCGGTAGAGTGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 5597 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5598 CCCACGGTGGGC 5609 >seq8768 Length=2110 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 65 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6 Query 165769 CCCCA 165773 ||||| Sbjct 5 CCCCA 1 >seq589 Length=4664 Score = 91.5 bits (100), Expect = 3e-13 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC 230454 || ||||| || | || | ||||||| | || ||||| | || || ||| || ||| Sbjct 4298 GAGGCAGTGGATATAGAGAGGGAGTTCGTGTGCGACGCGCTGCCGTG-CGCATTGGTGGG 4240 Query 230455 -ATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGC 230513 ||||||| | | ||| | |||||||| || || || || || | | || | ||| Sbjct 4239 GATGAACGGGGCGTTGATGAGTCAGTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGC 4180 Query 230514 ACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTC 230573 || || | || ||| |||||| | | ||| || |||| | |||||| | ||||| Sbjct 4179 GCTCGGGTGCGGGAAGGTGTACGGCGTGACGAATCCATTTGATTGGATGGAGTTGATTTC 4120 Query 230574 GCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 ||| ||||||||||| || ||||| || ||| | ||| | || || || | | || ||| Sbjct 4119 GCTGCAAGGGAAGACGAATTTCTTTGAGAAGAGAGTCGGGGAATACCAAAAGGCTTCTGT 4060 Query 230634 GATG 230637 |||| Sbjct 4059 GATG 4056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054591683895440