Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq89547 143 3e-29 seq235167 116 4e-21 >seq89547 Length=5293 Score = 143 bits (158), Expect = 3e-29 Identities = 548/850 (64%), Gaps = 19/850 (2%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | ||| | ||||| || || ||||| || || | || || || |||| Sbjct 2554 TGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCTCC 2613 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||||||||| | | | | || |||||| || | | | ||| Sbjct 2614 ATCCAATCAAAAGGATTGGACACACCGTACAGCTTCCCGTACCCAAGCGCACCCAACAAT 2673 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 |||||||| ||||| ||||| || || | ||| ||||| | ||||| || | | ||| Sbjct 2674 CTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCA-ACGC 2732 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAA-TAATAC 16913 | ||| || || || || ||| | |||||| | ||||| ||||| | ||| | Sbjct 2733 GCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAACGC 2792 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTA----TGTTTAAGATGTTTAAACATCAGACATGCG 16969 || | || |||||| | | | ||| ||| ||| ||| || ||| Sbjct 2793 CTTCA-CGCGCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAGGCACGCG 2847 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 |||||||| || | ||||| |||| ||| | || || || || ||||| || ||| Sbjct 2848 AAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGC 2907 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || || || || || | ||||||||||||| || ||| || ||||| || ||| Sbjct 2908 ATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCC 2967 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || ||| | |||||||||||||||| || || | ||| | || || ||||| Sbjct 2968 TCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAGCCGT--CG-ATCCAA 3024 Query 17150 TTCTGCACCCACTCGGCTT--TTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 || | ||||| ||||| ||||| | ||| | ||| || ||||| | ||| | Sbjct 3025 TTTAACGCCCACGTGGCTTTCTTTGC--GACGCAGGGAACCGTCTCGATGGCGTGAAAGA 3082 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 | ||||| | ||| | || || || || | || || ||||||||||| Sbjct 3083 GACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGG 3142 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 |||| |||||||| ||||| ||||| || ||||| ||| || || || || | || | Sbjct 3143 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGA 3202 Query 17328 CTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 | ||| ||| | | | || || || ||| |||||||||||| || || || | Sbjct 3203 CCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCAAAGA 3262 Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTA 17447 | || | | ||| | | ||| | || ||||| | || || | ||||| | Sbjct 3263 AGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGA 3322 Query 17448 AATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACA 17507 ||||| || | ||| ||||| || | ||||||||| || | || || || |||| Sbjct 3323 GATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACA 3382 Query 17508 TATTCCAAAT 17517 | | |||||| Sbjct 3383 TTTCCCAAAT 3392 >seq235167 Length=544 Score = 116 bits (128), Expect = 4e-21 Identities = 255/377 (68%), Gaps = 5/377 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | ||| || |||| ||| || ||||| || | Sbjct 98 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 157 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || ||||| || || || || ||||||||||||||| ||| || | Sbjct 158 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 217 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | |||||||| || || ||| | |||||||| || | || || ||| | ||| | Sbjct 218 AGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 277 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||| || | |||| ||||| |||| | ||| || |||||| | Sbjct 278 CGT--CG-ATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAA 334 Query 17196 TGGCCTTAAATAA-TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||| |||||| ||| ||||| | || |||| ||||| || | || || Sbjct 335 AGGCGCGAAATAAGCGGCTC-TTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 393 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||||||||||||| |||||||| ||||| || || || ||||| ||| || || Sbjct 394 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 453 Query 17315 TCCGCTATTTGAACTTC 17331 || | | ||| ||||| Sbjct 454 TCGGAGACTTGGACTTC 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516002744811840