Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq43799 118 2e-21 seq208088 113 7e-20 seq68514 105 1e-17 seq43779 105 1e-17 seq43778 98.7 1e-15 >seq43799 Length=2218 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| || ||| | ||| ||||| | Sbjct 305 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 246 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 245 GACACCATCGACAATGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 186 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 185 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 126 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 125 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTAT 76 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||||||| | ||| ||||| | Sbjct 533 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 474 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || || || || |||||||||||| Sbjct 473 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 414 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || ||| |||| || | | || || || Sbjct 413 CAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTGCTGACTACAAC 354 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | |||||||| | ||| | || |||||||| Sbjct 353 ATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGTAT 304 >seq208088 Length=533 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || || ||||| || | ||| | ||| Sbjct 347 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 288 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||| || || ||||| || ||||| || || Sbjct 287 GACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG 228 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| || |||||| | |||||| | || || | | || ||||| Sbjct 227 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 168 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || |||| | ||| || ||||||| || Sbjct 167 ATTCAGAAGGAGTCCACACTCCACCTGGTCCTCCGTCTAAGAGGTGGAAT 118 >seq68514 Length=8688 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || || | ||| | || | Sbjct 8445 ATGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCT 8504 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || ||||| ||||| ||||| || ||||||||||| Sbjct 8505 GATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAG 8564 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || || |||| |||||||| Sbjct 8565 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATTATAAC 8624 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || || || | ||| | || | ||| | || |||||| Sbjct 8625 ATTCAAAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGT 8672 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || || || || ||| | ||| | || || | Sbjct 821 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 880 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || ||||| || ||||| || ||||| ||||| Sbjct 881 -GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCA 939 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||||| || || | || || || | || ||||| Sbjct 940 ACAAAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGCCGCACGTTGGCTGACTATAA 999 Query 124718 TATTCAAAAAGAATCAACT 124736 || || ||||| |||||| Sbjct 1000 CATCCAGAAAGAGTCAACT 1018 >seq43779 Length=2831 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| || | ||| | ||| Sbjct 191 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 132 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||| || || ||||| || ||||| || || Sbjct 131 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAG 72 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| || |||||| | |||||| |||| ||| | | ||| || || Sbjct 71 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGTCGCACACTTGCAGACTACAAC 12 Query 124719 ATTCAAAAAGA 124729 || || || || Sbjct 11 ATCCAGAAGGA 1 >seq43778 Length=4696 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| || ||| | ||| | || Sbjct 3047 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 2988 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | || || || |||||||| || || || ||||| || || Sbjct 2987 GACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 2928 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | || ||| | | || | | |||||| || Sbjct 2927 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAAC 2868 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| || ||||| || ||||||||||| || Sbjct 2867 ATTCAGAAGGAATCCACATTGCATTTGGTGTT 2836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||||||| | ||| ||||| | Sbjct 3731 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAAACTATAACTTTGGAGGTTGAAAGCTCT 3672 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || || ||||| || || || || || || || ||||| Sbjct 3671 GACACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 3612 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || |||||| | || ||| | || || ||| || || || Sbjct 3611 CAGAGATTGATCTTTGCTGGCAAACAACTTGAAGATGGCCGTACTCTAGCTGACTACAAC 3552 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | || |||||||| Sbjct 3551 ATCCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGTAT 3502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753203910118400