Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq43778 102 6e-17 seq68514 100 2e-16 seq68153 98.7 8e-16 seq68152 98.7 8e-16 seq43799 98.7 8e-16 seq208088 95.1 1e-14 seq68470 91.5 1e-13 >seq43778 Length=4696 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||||||| || || || | | | || || Sbjct 3067 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGCAAGGGTCCTACCATCTTCA 3126 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| ||| ||||||||||| | |||||||| || Sbjct 3127 AGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTGG 3186 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| || |||||||||| || || ||||| Sbjct 3187 ATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTCCACCTCCAAAGTGATGGTCTTC 3246 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||| ||||| Sbjct 3247 CCAGTCAAAGTCTTCACAAAGATCTGCAT 3275 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || || |||||||| ||||||||||| ||| ||| | || || Sbjct 3750 TACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTC 3809 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||||| || || || || | || || ||||| || || | || ||||| ||| Sbjct 3810 AAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTG 3869 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| || || | | | ||||| | |||||||| | |||||| ||||| Sbjct 3870 AATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTT 3929 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| ||||||||||||||| Sbjct 3930 TCCAGTGAGGGTCTTTACAAAGATTTGCATG 3960 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||| ||||||||| || | | || || Sbjct 3295 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 3354 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||| ||||| || || | || |||||||| | Sbjct 3355 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 3414 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| | | | ||| || ||| || || | |||||| |||||| Sbjct 3415 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 3474 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||||||||| Sbjct 3475 CCAGTAAGAGTCTTAACAAAGATTTGCAT 3503 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || || | || || Sbjct 3523 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCTTCA 3582 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || ||||| | ||| || |||||||| | |||||||||||| | Sbjct 3583 AGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGA 3642 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | || ||||||| || || || || Sbjct 3643 ATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTTA 3702 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || |||||||| || ||||| Sbjct 3703 CCAGTCAGGGTTTTCACAAAAATCTGCAT 3731 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || | || ||| || ||||| |||| ||| ||||||||||||||||| || Sbjct 2821 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTGCA 2880 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || || || || || || || || ||||||| ||| ||||| || || Sbjct 2881 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 2940 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| || || || ||| || | | ||||| || ||| ||| Sbjct 2941 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 3000 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || || || || || |||||||||||||| ||||||||| Sbjct 3001 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCATG 3048 >seq68514 Length=8688 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| |||||||| ||| || ||| | || || ||||| Sbjct 568 GTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTG 509 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| |||| ||||| || || ||||| | |||||||||||| || || Sbjct 508 CTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTT 449 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | |||||| || | || ||||| ||||| || Sbjct 448 GGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGT 389 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || ||||| ||||| ||||| ||| Sbjct 388 TAGGGTTTTCACGAAGATCTGCATATTG 361 >seq68153 Length=714 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| |||||||||||||||||| || || || |||| || || || Sbjct 83 TGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGCCCGTCCTCAAGCTGC 142 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| || | || ||| || || || || | || ||||||||| ||| || Sbjct 143 TTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTG 202 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | ||| || ||||||||||| |||||||||||| || ||| Sbjct 203 GCCTTGACGTTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGGTC 262 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 | ||||| ||||| || |||||| Sbjct 263 AATGTCTTGACAAAAATCTGCATG 286 >seq68152 Length=1216 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| |||||||||||||||||| || || || |||| || || || Sbjct 959 TGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTGC 1018 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| || | || ||| || || || || | || ||||||||| ||| || Sbjct 1019 TTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTG 1078 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | ||| || ||||||||||| |||||||||||| || ||| Sbjct 1079 GCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGGTC 1138 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 | ||||| ||||| || |||||| Sbjct 1139 AATGTCTTGACAAAAATCTGCATG 1162 >seq43799 Length=2218 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||| || || ||| |||| | || || Sbjct 781 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCAAGTGTGCGACCATCCTCG 840 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || || | || ||| ||||| || || | || ||||||||| | Sbjct 841 AGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 900 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | |||| | |||||||| | |||||||||||| Sbjct 901 ATCTTGGCTTTCACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGAGTAATCGTCTTG 960 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 961 CCAGTGAGGGTCTTTACAAAGATCTGCAT 989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||||| ||||||||||| ||| ||| | || || Sbjct 553 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 612 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| ||||| || || | || || ||||| || || | || ||||| ||| | Sbjct 613 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 672 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| | |||||||| | ||| || ||||| Sbjct 673 ATTTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGTCTTT 732 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 733 CCAGTGAGGGTCTTTACAAAGATCTGCAT 761 >seq208088 Length=533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| ||| || ||| ||||||||||||||| |||||| Sbjct 121 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 180 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || |||||||| || || || || | || || ||||| || || Sbjct 181 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 240 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| |||||| || || | | | |||| | |||||| Sbjct 241 ATCCCTTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACC 300 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 301 TCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 347 >seq68470 Length=2690 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| ||| || ||| |||| || || |||||||| ||||| Sbjct 398 CTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAA 339 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| ||||| || || | ||||||||||| ||| || ||| || Sbjct 338 GATAAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 279 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| || || | ||||| || ||||| ||||| || ||||| Sbjct 278 GTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCAC 219 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 218 GAAGATCTGCATG 206 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| || || ||| |||| |||||||| || || || || Sbjct 626 CTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAA 567 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| ||||| || || | ||||||||||| ||| || ||| || Sbjct 566 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 507 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||| ||||| | ||| |||||||| || || || || || || Sbjct 506 ATCGATCGTGTCTGAGCTCTCAACCTCGAGGGTGATCGTCTTCCCGGTTAGGGTTTTGAC 447 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 446 AAAGATCTGCATG 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393926885288248