Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq102355 93.3 4e-14 seq235167 84.2 2e-11 >seq102355 Length=2235 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||||||||| |||||||||||| ||||| |||||||| || || || Sbjct 1044 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 985 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 984 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA 946 >seq235167 Length=544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 103 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 162 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| || || || ||||| ||||||||||| || ||| || || ||| Sbjct 163 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 222 Query 14321 AATATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCC 14361 ||||| || || || ||| ||||||||||| | || ||||| Sbjct 223 AATATCCCTTCCAC-GCAGGCAAACGCTATCAGTC--TCTCC 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480907679531840