Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq89547 172 7e-38 seq235167 116 5e-21 seq80422 86.0 8e-12 seq589 82.4 1e-10 >seq89547 Length=5293 Score = 172 bits (190), Expect = 7e-38 Identities = 409/614 (67%), Gaps = 8/614 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || || |||||||||||||| |||||||| |||| || || || || || | Sbjct 2834 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGA 2893 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 |||| | ||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 2894 ACGTCAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 2952 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33749 || ||||| || || || || |||||| || || | |||||| || || | | | Sbjct 2953 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAG 3012 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 3013 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 3069 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 3070 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 3129 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 3130 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCC 3189 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| | ||| || || || || | | | || | || || || || || || Sbjct 3190 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 3249 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 ||||||||| || || | || || | | || | || ||||| | ||||| Sbjct 3250 GAGGCTGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 3309 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 3310 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 3369 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 34169 || || || ||||| | ||| || | |||| || || ||||| || ||||| || Sbjct 3370 GCTTTCTTGTACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGATCG 3429 Query 34170 GGATTTGGTGCAAG 34183 |||||||| || || Sbjct 3430 GGATTTGGGGCTAG 3443 >seq235167 Length=544 Score = 116 bits (128), Expect = 5e-21 Identities = 256/378 (68%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 98 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 157 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 158 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 217 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 33749 | ||||| || ||||| || ||| ||||| || || |||||||| | || | | | | Sbjct 218 AGAAGAATATCCCTTCCAC-GCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 276 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| ||| | |||||||||||||| || || || |||| |||||| Sbjct 277 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 333 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 | ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 334 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 393 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 394 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 453 Query 33930 TCGGTAATCTGCACTTCT 33947 |||| | || |||||| Sbjct 454 TCGGAGACTTGGACTTCT 471 >seq80422 Length=4294 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 1444 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1385 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| | | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 1384 GTATATTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1326 Query 63781 ACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||||||||||| |||| Sbjct 1325 ACATATGCTGAGGTCTTTCTACAA 1302 >seq589 Length=4664 Score = 82.4 bits (90), Expect = 1e-10 Identities = 165/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||| ||||| || || || |||| |||| | ||| || | Sbjct 4352 ACAACAAGCACGCGAAATCACAGTGGAGTCCTTCATCTCGCGAGATTAGCTTGTTCGAGA 4411 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC-GAATGATCCG 33692 | || || || | ||||| || |||||||| | | ||||||| | || ||| || Sbjct 4412 AGGTTAGGCCCGACATTAACCCGCGCTTTTTCAACTAAAATATC-ACGCAGAAACTGCCT 4470 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 33749 || ||||| || ||||| || |||||| || || |||||||| | || | | | | Sbjct 4471 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 4530 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 | ||| ||||| ||| | |||||||||||||| || || || ||| |||||| Sbjct 4531 C---CATCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACCGCACCGTTTC 4586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627940050752640